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OPENSEQ.org

L18 - S04
UniProt: Q5SHQ4 - P80373
Length: 321
Sequences: 1227
Seq/Len: 3.86
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2dS 3v2eD 3v2fSContact Map
2j002j00D 2j01S 2j02D 2j03SContact Map
4juw4juwD 4juxSContact Map
4kix4kixO 4kiyD 4kizO 4kj0D 4kj1O 4kj2D 4kj3O 4kj4DContact Map
4kj54kj5O 4kj6D 4kj7O 4kj8D 4kj9O 4kjaD 4kjbO 4kjcDContact Map
3ohc3ohcD 3ohdD 3ohjS 3ohkSContact Map
3knh3knhD 3kniS 3knjD 3knkSContact Map
3uz63uz6G 3uz7G 3uz8Q 3uz9QContact Map
3oge3ogeD 3ogyD 3oh5S 3oh7SContact Map
3uyd3uydG 3uyeQ 3uyfG 3uygQContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
32_L 79_F 0.91 0.00
82_I 146_I 0.84 0.00
73_L 147_A 0.75 0.00
54_L 183_G 0.75 0.00
83_K 206_F 0.74 0.00
22_G 179_E 0.74 0.00
42_D 125_H 0.73 0.00
28_V 121_V 0.70 0.00
85_V 107_R 0.69 0.00
29_F 51_P 0.68 0.00
11_K 195_A 0.68 0.00
73_L 70_I 0.67 0.00
61_N 206_F 0.64 0.00
10_R 134_D 0.64 0.00
99_K 172_P 0.63 0.00
24_L 124_G 0.63 0.00
13_R 209_R 0.63 0.00
54_L 97_L 0.63 0.00
12_F 141_R 0.62 0.00
94_Y 5_I 0.61 0.00
90_G 65_R 0.61 0.00
22_G 148_V 0.61 0.00
23_R 140_V 0.59 0.00
17_R 80_E 0.59 0.00
21_T 134_D 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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