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OPENSEQ.org
L06 - S15
UniProt: Q5SHQ3 - Q5SJ76
Length: 269
Sequences: 1460
Seq/Len: 5.47
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cO 3v2dH 3v2eO 3v2fHContact Map
2j002j00O 2j01H 2j02O 2j03HContact Map
4juw4juwO 4juxHContact Map
4kix4kixG 4kiyO 4kizG 4kj0O 4kj1G 4kj2O 4kj3G 4kj4OContact Map
4kj54kj5G 4kj6O 4kj7G 4kj8O 4kj9G 4kjaO 4kjbG 4kjcOContact Map
3ohc3ohcO 3ohdO 3ohjH 3ohkHContact Map
3knh3knhO 3kniH 3knjO 3knkHContact Map
3uz63uz6R 3uz7R 3uz8H 3uz9HContact Map
3oge3ogeO 3ogyO 3oh5H 3oh7HContact Map
3uyd3uydR 3uyeH 3uyfR 3uygHContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
67_L 35_R 1.02 0.04
22_G 89_G 0.86 0.02
95_R 89_G 0.82 0.02
113_V 51_H 0.73 0.01
37_V 47_K 0.72 0.01
53_E 45_V 0.69 0.01
8_P 35_R 0.68 0.01
119_E 45_V 0.65 0.01
37_V 83_E 0.64 0.01
139_Q 68_R 0.61 0.01
99_V 48_K 0.60 0.01
34_E 47_K 0.60 0.01
60_R 15_F 0.58 0.01
178_A 89_G 0.57 0.01
128_P 43_L 0.57 0.01
126_P 51_H 0.56 0.01
107_V 76_E 0.56 0.01
148_I 22_T 0.54 0.01
137_D 3_I 0.54 0.01
178_A 2_P 0.54 0.01
143_Q 43_L 0.53 0.01
143_Q 60_V 0.53 0.01
96_A 17_R 0.53 0.01
16_S 11_V 0.53 0.01
6_R 48_K 0.52 0.01
41_M 87_I 0.52 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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