May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L06 - L18
UniProt: Q5SHQ3 - Q5SHQ4
Length: 292
Sequences: 1405
Seq/Len: 4.86
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoENContact Map
1vq81vq8ENContact Map
1vqp1vqpENContact Map
1vqm1vqmENContact Map
1vql1vqlENContact Map
1vqk1vqkENContact Map
1yhq1yhqENContact Map
1s721s72ENContact Map
1vq91vq9ENContact Map
1vqn1vqnENContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
30_K 86_A 0.88 0.00
23_R 99_K 0.73 0.00
178_A 32_L 0.72 0.00
163_Y 55_A 0.72 0.00
92_I 112_F 0.67 0.00
32_E 10_R 0.66 0.00
106_T 32_L 0.66 0.00
174_G 42_D 0.65 0.00
67_L 104_G 0.65 0.00
122_T 8_E 0.63 0.00
121_I 81_G 0.63 0.00
11_V 8_E 0.62 0.00
5_G 13_R 0.62 0.00
80_S 27_S 0.62 0.00
4_I 82_I 0.60 0.00
120_G 10_R 0.59 0.00
62_K 31_S 0.57 0.00
147_N 36_Y 0.57 0.00
49_V 12_F 0.57 0.00
92_I 103_E 0.57 0.00
155_S 32_L 0.56 0.00
92_I 101_L 0.56 0.00
84_S 103_E 0.55 0.00
171_L 24_L 0.55 0.00
83_Y 60_G 0.55 0.00
13_K 32_L 0.55 0.00
116_E 22_G 0.54 0.00
137_D 101_L 0.53 0.00
67_L 92_Y 0.53 0.00
41_M 39_I 0.53 0.00
147_N 39_I 0.53 0.00
5_G 93_K 0.53 0.00
92_I 36_Y 0.53 0.00
137_D 32_L 0.52 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.2231 seconds.