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OPENSEQ.org

L06 - S08
UniProt: Q5SHQ3 - Q5SHQ2
Length: 318
Sequences: 1770
Seq/Len: 5.76
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cH 3v2dH 3v2eH 3v2fHContact Map
2j002j00H 2j01H 2j02H 2j03HContact Map
4juw4juwH 4juxHContact Map
4kix4kixG 4kiyH 4kizG 4kj0H 4kj1G 4kj2H 4kj3G 4kj4HContact Map
4kj54kj5G 4kj6H 4kj7G 4kj8H 4kj9G 4kjaH 4kjbG 4kjcHContact Map
3ohc3ohcH 3ohdH 3ohjH 3ohkHContact Map
3knh3knhH 3kniH 3knjH 3knkHContact Map
3uz63uz6K 3uz7K 3uz8H 3uz9HContact Map
3u5b3u5cW 3u5eH 3u5gW 3u5iHContact Map
3oge3ogeH 3ogyH 3oh5H 3oh7HContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
177_G 42_E 0.79 0.00
19_V 119_L 0.74 0.00
171_L 44_F 0.72 0.00
63_S 52_D 0.72 0.00
92_I 16_A 0.72 0.00
68_T 134_I 0.69 0.00
69_R 14_R 0.68 0.00
170_R 19_V 0.66 0.00
109_F 34_E 0.66 0.00
107_V 14_R 0.65 0.00
59_R 88_K 0.63 0.00
120_G 36_L 0.63 0.00
11_V 45_I 0.63 0.00
8_P 128_G 0.63 0.00
56_S 57_P 0.62 0.00
158_H 2_L 0.62 0.00
177_G 21_K 0.62 0.00
166_G 77_E 0.62 0.00
65_H 21_K 0.62 0.00
73_A 47_G 0.61 0.00
150_A 23_S 0.61 0.00
162_I 25_D 0.60 0.00
24_V 52_D 0.60 0.00
24_V 127_L 0.60 0.00
92_I 113_S 0.60 0.00
98_L 51_V 0.59 0.00
62_K 89_P 0.59 0.00
116_E 83_I 0.59 0.00
147_N 96_G 0.58 0.00
81_E 93_V 0.58 0.00
13_K 20_Y 0.57 0.00
38_S 23_S 0.57 0.00
138_K 115_S 0.57 0.00
145_A 88_K 0.57 0.00
48_G 44_F 0.57 0.00
135_G 40_A 0.57 0.00
121_I 24_T 0.56 0.00
169_V 23_S 0.56 0.00
149_R 92_R 0.56 0.00
131_V 134_I 0.56 0.00
14_G 38_I 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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