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OPENSEQ.org
L06 - S12
UniProt: Q5SHQ3 - Q5SHN3
Length: 312
Sequences: 1358
Seq/Len: 4.47
I_Prob: 0.17
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cL 3v2dH 3v2eL 3v2fHContact Map
2j002j00L 2j01H 2j02L 2j03HContact Map
4juw4juwL 4juxHContact Map
4kix4kixG 4kiyL 4kizG 4kj0L 4kj1G 4kj2L 4kj3G 4kj4LContact Map
4kj54kj5G 4kj6L 4kj7G 4kj8L 4kj9G 4kjaL 4kjbG 4kjcLContact Map
3knh3knhL 3kniH 3knjL 3knkHContact Map
3ohc3ohcL 3ohdL 3ohjH 3ohkHContact Map
3uz63uz6O 3uz7O 3uz8H 3uz9HContact Map
3oge3ogeL 3ogyL 3oh5H 3oh7HContact Map
3uyd3uydO 3uyeH 3uyfO 3uygHContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
153_K 30_R 1.17 0.17
67_L 52_V 1.13 0.15
174_G 2_P 1.02 0.11
67_L 38_R 0.96 0.09
110_S 35_T 0.93 0.08
177_G 79_V 0.90 0.07
86_E 108_K 0.88 0.07
158_H 58_T 0.85 0.06
104_E 30_R 0.85 0.06
174_G 68_P 0.84 0.06
107_V 29_F 0.80 0.05
178_A 38_R 0.79 0.05
104_E 79_V 0.79 0.05
63_S 79_V 0.77 0.04
67_L 40_V 0.76 0.04
9_I 88_K 0.74 0.04
21_P 125_A 0.73 0.04
113_V 79_V 0.73 0.04
155_S 96_H 0.72 0.04
178_A 108_K 0.72 0.04
12_P 79_V 0.72 0.04
41_M 25_K 0.71 0.04
41_M 8_V 0.70 0.03
173_P 82_I 0.70 0.03
144_V 40_V 0.70 0.03
51_R 15_V 0.69 0.03
47_E 109_D 0.69 0.03
13_K 16_R 0.68 0.03
117_P 36_V 0.68 0.03
13_K 124_E 0.68 0.03
5_G 68_P 0.68 0.03
120_G 79_V 0.67 0.03
3_R 29_F 0.67 0.03
139_Q 105_A 0.66 0.03
22_G 119_T 0.65 0.03
135_G 49_L 0.65 0.03
11_V 21_V 0.64 0.03
62_K 20_K 0.64 0.03
86_E 49_L 0.63 0.03
99_V 119_T 0.63 0.03
114_V 54_K 0.63 0.03
63_S 104_A 0.63 0.03
61_H 105_A 0.63 0.02
147_N 5_N 0.62 0.02
79_V 94_R 0.62 0.02
88_L 109_D 0.62 0.02
67_L 27_A 0.62 0.02
114_V 113_S 0.62 0.02
73_A 20_K 0.61 0.02
153_K 16_R 0.61 0.02
168_P 26_G 0.60 0.02
134_S 58_T 0.60 0.02
24_V 15_V 0.60 0.02
5_G 2_P 0.60 0.02
115_V 5_N 0.59 0.02
104_E 70_E 0.59 0.02
60_R 124_E 0.59 0.02
14_G 121_K 0.58 0.02
71_L 60_G 0.58 0.02
177_G 25_K 0.58 0.02
148_I 13_E 0.58 0.02
104_E 96_H 0.58 0.02
43_V 60_G 0.57 0.02
110_S 82_I 0.57 0.02
70_T 108_K 0.57 0.02
27_K 63_V 0.57 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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