OPENSEQ.org
L06 - S13
UniProt: Q5SHQ3 - P80377
Length: 306
Sequences: 1681
Seq/Len: 5.60
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cM 3v2dH 3v2eM 3v2fHContact Map
2j002j00M 2j01H 2j02M 2j03HContact Map
4juw4juwM 4juxHContact Map
4kix4kixG 4kiyM 4kizG 4kj0M 4kj1G 4kj2M 4kj3G 4kj4MContact Map
4kj54kj5G 4kj6M 4kj7G 4kj8M 4kj9G 4kjaM 4kjbG 4kjcMContact Map
3ohc3ohcM 3ohdM 3ohjH 3ohkHContact Map
3knh3knhM 3kniH 3knjM 3knkHContact Map
3uz63uz6P 3uz7P 3uz8H 3uz9HContact Map
3u5b3u5cS 3u5eH 3u5gS 3u5iHContact Map
3oge3ogeM 3ogyM 3oh5H 3oh7HContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
176_A 8_E 0.81 0.00
173_P 8_E 0.77 0.00
13_K 25_I 0.77 0.00
65_H 8_E 0.72 0.00
130_R 113_P 0.72 0.00
33_L 80_R 0.71 0.00
14_G 74_V 0.67 0.00
115_V 84_I 0.67 0.00
26_V 30_A 0.67 0.00
177_G 8_E 0.66 0.00
106_T 95_G 0.66 0.00
173_P 111_K 0.65 0.00
83_Y 65_K 0.64 0.00
177_G 9_I 0.64 0.00
109_F 98_V 0.64 0.00
50_V 64_W 0.63 0.00
47_E 55_R 0.60 0.00
62_K 98_V 0.60 0.00
81_E 52_E 0.60 0.00
139_Q 39_I 0.59 0.00
148_I 53_V 0.59 0.00
9_I 41_P 0.59 0.00
62_K 99_R 0.58 0.00
173_P 83_D 0.58 0.00
178_A 44_R 0.57 0.00
176_A 116_T 0.57 0.00
23_R 23_Y 0.57 0.00
48_G 9_I 0.57 0.00
35_V 76_A 0.57 0.00
117_P 18_A 0.56 0.00
109_F 116_T 0.56 0.00
7_L 7_V 0.56 0.00
69_R 67_E 0.55 0.00
162_I 49_T 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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