OPENSEQ.org
L06 - S11
UniProt: Q5SHQ3 - P80376
Length: 309
Sequences: 1542
Seq/Len: 5.06
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cK 3v2dH 3v2eK 3v2fHContact Map
2j002j00K 2j01H 2j02K 2j03HContact Map
4juw4juwK 4juxHContact Map
4kix4kixG 4kiyK 4kizG 4kj0K 4kj1G 4kj2K 4kj3G 4kj4KContact Map
4kj54kj5G 4kj6K 4kj7G 4kj8K 4kj9G 4kjaK 4kjbG 4kjcKContact Map
3ohc3ohcK 3ohdK 3ohjH 3ohkHContact Map
3knh3knhK 3kniH 3knjK 3knkHContact Map
3uz63uz6N 3uz7N 3uz8H 3uz9HContact Map
3u5b3u5cO 3u5eH 3u5gO 3u5iHContact Map
3oge3ogeK 3ogyK 3oh5H 3oh7HContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
67_L 83_I 0.94 0.01
67_L 18_R 0.92 0.01
128_P 24_S 0.83 0.01
126_P 11_K 0.78 0.01
171_L 77_M 0.77 0.01
176_A 98_L 0.76 0.01
109_F 83_I 0.76 0.01
128_P 105_V 0.75 0.01
149_R 116_H 0.73 0.01
69_R 50_Y 0.73 0.01
67_L 22_H 0.72 0.01
95_R 96_R 0.71 0.01
14_G 11_K 0.71 0.01
14_G 105_V 0.70 0.01
173_P 79_S 0.70 0.01
70_T 64_A 0.69 0.01
96_A 30_V 0.69 0.01
132_R 59_Y 0.69 0.01
38_S 4_K 0.68 0.01
60_R 3_K 0.66 0.01
115_V 97_A 0.64 0.01
20_A 97_A 0.63 0.01
70_T 10_V 0.63 0.00
176_A 111_D 0.62 0.00
141_V 30_V 0.61 0.00
105_L 23_A 0.61 0.00
24_V 107_S 0.61 0.00
133_V 68_A 0.60 0.00
59_R 70_K 0.60 0.00
67_L 10_V 0.60 0.00
94_Y 21_I 0.59 0.00
63_S 105_V 0.59 0.00
67_L 65_A 0.59 0.00
125_V 116_H 0.59 0.00
171_L 94_A 0.59 0.00
50_V 59_Y 0.58 0.00
177_G 97_A 0.58 0.00
59_R 1_M 0.58 0.00
17_V 29_I 0.58 0.00
171_L 127_K 0.58 0.00
98_L 79_S 0.58 0.00
31_G 120_R 0.57 0.00
29_P 108_I 0.57 0.00
173_P 43_S 0.57 0.00
65_H 29_I 0.57 0.00
80_S 5_P 0.57 0.00
178_A 93_Q 0.57 0.00
34_E 39_P 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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