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OPENSEQ.org
L06 - S03
UniProt: Q5SHQ3 - P80372
Length: 419
Sequences: 1475
Seq/Len: 3.79
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cC 3v2dH 3v2eC 3v2fHContact Map
2j002j00C 2j01H 2j02C 2j03HContact Map
4juw4juwC 4juxHContact Map
4kix4kixG 4kiyC 4kizG 4kj0C 4kj1G 4kj2C 4kj3G 4kj4CContact Map
4kj54kj5G 4kj6C 4kj7G 4kj8C 4kj9G 4kjaC 4kjbG 4kjcCContact Map
3knh3knhC 3kniH 3knjC 3knkHContact Map
3ohc3ohcC 3ohdC 3ohjH 3ohkHContact Map
3uz63uz6F 3uz7F 3uz8H 3uz9HContact Map
3u5b3u5cD 3u5eH 3u5gD 3u5iHContact Map
3oge3ogeC 3ogyC 3oh5H 3oh7HContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
158_H 85_R 0.85 0.00
4_I 71_A 0.85 0.00
99_V 163_A 0.84 0.00
67_L 173_V 0.84 0.00
21_P 54_R 0.83 0.00
43_V 20_S 0.83 0.00
56_S 23_Y 0.82 0.00
176_A 211_Q 0.81 0.00
174_G 35_E 0.78 0.00
75_A 112_S 0.76 0.00
89_I 204_L 0.75 0.00
21_P 66_V 0.75 0.00
113_V 141_V 0.72 0.00
80_S 37_Q 0.72 0.00
42_R 52_L 0.71 0.00
5_G 35_E 0.70 0.00
60_R 75_V 0.70 0.00
176_A 136_Q 0.70 0.00
121_I 119_R 0.70 0.00
67_L 169_A 0.70 0.00
109_F 37_Q 0.69 0.00
66_G 164_R 0.68 0.00
169_V 206_E 0.68 0.00
118_P 169_A 0.67 0.00
149_R 175_L 0.67 0.00
139_Q 30_R 0.67 0.00
4_I 30_R 0.67 0.00
131_V 41_G 0.67 0.00
115_V 198_V 0.67 0.00
42_R 54_R 0.67 0.00
176_A 108_N 0.66 0.00
9_I 182_I 0.66 0.00
21_P 88_R 0.66 0.00
176_A 161_E 0.65 0.00
11_V 117_A 0.64 0.00
47_E 154_S 0.64 0.00
113_V 173_V 0.64 0.00
89_I 36_D 0.63 0.00
169_V 139_Q 0.63 0.00
102_A 43_L 0.63 0.00
174_G 129_A 0.63 0.00
11_V 126_R 0.62 0.00
90_K 196_L 0.62 0.00
45_V 76_V 0.62 0.00
176_A 107_Q 0.62 0.00
29_P 106_V 0.62 0.00
19_V 186_F 0.61 0.00
80_S 208_I 0.61 0.00
153_K 167_W 0.61 0.00
118_P 12_L 0.61 0.00
9_I 152_I 0.61 0.00
24_V 198_V 0.60 0.00
165_A 106_V 0.60 0.00
178_A 79_R 0.60 0.00
110_S 193_Y 0.60 0.00
24_V 142_M 0.60 0.00
74_N 198_V 0.59 0.00
16_S 163_A 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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