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OPENSEQ.org
L06 - S02
UniProt: Q5SHQ3 - P80371
Length: 436
Sequences: 1628
Seq/Len: 4.01
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dH 3v2eB 3v2fHContact Map
2j002j00B 2j01H 2j02B 2j03HContact Map
4juw4juwB 4juxHContact Map
4kix4kixG 4kiyB 4kizG 4kj0B 4kj1G 4kj2B 4kj3G 4kj4BContact Map
4kj54kj5G 4kj6B 4kj7G 4kj8B 4kj9G 4kjaB 4kjbG 4kjcBContact Map
3knh3knhB 3kniH 3knjB 3knkHContact Map
3ohc3ohcB 3ohdB 3ohjH 3ohkHContact Map
3uz63uz6E 3uz7E 3uz8H 3uz9HContact Map
3oge3ogeB 3ogyB 3oh5H 3oh7HContact Map
3uyd3uydE 3uyeH 3uyfE 3uygHContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
92_I 31_Y 1.00 0.02
67_L 101_M 0.81 0.01
177_G 37_N 0.78 0.01
5_G 23_R 0.77 0.01
121_I 57_F 0.77 0.01
174_G 23_R 0.77 0.01
104_E 91_P 0.76 0.01
5_G 76_Q 0.74 0.01
63_S 90_M 0.72 0.01
166_G 181_F 0.72 0.01
87_L 31_Y 0.71 0.01
36_P 139_K 0.71 0.01
31_G 13_A 0.69 0.01
139_Q 41_I 0.69 0.01
67_L 140_H 0.69 0.01
174_G 76_Q 0.68 0.01
28_G 13_A 0.67 0.01
114_V 210_S 0.67 0.01
27_K 8_K 0.67 0.01
104_E 88_A 0.67 0.01
173_P 229_V 0.67 0.01
137_D 41_I 0.67 0.01
39_P 211_I 0.67 0.01
176_A 40_H 0.67 0.01
115_V 111_R 0.66 0.01
15_V 182_I 0.66 0.01
76_V 161_A 0.66 0.01
11_V 147_K 0.65 0.01
83_Y 155_L 0.65 0.01
138_K 195_D 0.64 0.01
27_K 32_I 0.64 0.01
89_I 59_E 0.64 0.01
169_V 6_T 0.64 0.01
148_I 62_A 0.64 0.01
118_P 140_H 0.63 0.01
72_I 182_I 0.63 0.01
11_V 47_T 0.63 0.01
132_R 195_D 0.62 0.01
173_P 169_K 0.62 0.01
57_D 67_T 0.62 0.01
153_K 136_V 0.62 0.01
177_G 45_Q 0.62 0.01
119_E 60_D 0.61 0.01
37_V 116_E 0.61 0.01
117_P 51_L 0.61 0.01
52_V 203_G 0.60 0.01
67_L 160_D 0.60 0.01
140_K 162_I 0.60 0.01
25_K 164_V 0.60 0.01
80_S 181_F 0.60 0.01
24_V 121_L 0.59 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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