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OPENSEQ.org
L06 - L16
UniProt: Q5SHQ3 - P60489
Length: 321
Sequences: 1405
Seq/Len: 4.43
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dHQ 3v2fHQContact Map
2j002j01HQ 2j03HQContact Map
4juw4juxHQContact Map
4kix4kixGM 4kizGM 4kj1GM 4kj3GMContact Map
4kj54kj5GM 4kj7GM 4kj9GM 4kjbGMContact Map
2zjr2zjrEJContact Map
4btc4btdHQContact Map
3uyd3uyeHP 3uygHPContact Map
4gd13r8sGM 3r8tGMContact Map
3ohc3ohjHQ 3ohkHQContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
11_V 20_A 0.88 0.00
177_G 61_G 0.79 0.00
137_D 106_V 0.75 0.00
67_L 79_L 0.74 0.00
122_T 90_V 0.72 0.00
33_L 95_A 0.72 0.00
76_V 121_A 0.68 0.00
98_L 67_R 0.67 0.00
10_P 42_I 0.67 0.00
75_A 32_Y 0.67 0.00
37_V 16_R 0.66 0.00
140_K 33_G 0.65 0.00
178_A 67_R 0.65 0.00
131_V 26_Y 0.65 0.00
121_I 43_T 0.64 0.00
83_Y 121_A 0.64 0.00
118_P 67_R 0.64 0.00
106_T 42_I 0.64 0.00
137_D 78_P 0.64 0.00
25_K 5_R 0.63 0.00
86_E 13_Q 0.62 0.00
8_P 58_F 0.62 0.00
122_T 20_A 0.61 0.00
113_V 9_Y 0.60 0.00
42_R 16_R 0.60 0.00
158_H 27_V 0.60 0.00
115_V 25_D 0.59 0.00
155_S 107_A 0.58 0.00
54_R 75_T 0.58 0.00
35_V 110_T 0.57 0.00
11_V 110_T 0.57 0.00
174_G 90_V 0.57 0.00
52_V 97_V 0.57 0.00
11_V 37_L 0.56 0.00
141_V 14_R 0.56 0.00
90_K 83_M 0.56 0.00
13_K 104_F 0.55 0.00
100_G 53_A 0.55 0.00
77_K 68_I 0.55 0.00
168_P 22_K 0.55 0.00
67_L 120_I 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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