May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L06 - L13
UniProt: Q5SHQ3 - P60488
Length: 320
Sequences: 1754
Seq/Len: 5.53
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoEJContact Map
1vq81vq8EJContact Map
1vqp1vqpEJContact Map
1vqm1vqmEJContact Map
1vql1vqlEJContact Map
1vqk1vqkEJContact Map
1yhq1yhqEJContact Map
1s721s72EJContact Map
1vq91vq9EJContact Map
1vqn1vqnEJContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
17_V 61_R 0.64 0.00
23_R 42_W 0.63 0.00
89_I 107_L 0.63 0.00
92_I 132_A 0.62 0.00
43_V 61_R 0.62 0.00
21_P 16_I 0.61 0.00
79_V 63_T 0.61 0.00
92_I 72_Y 0.60 0.00
168_P 8_Q 0.60 0.00
173_P 1_M 0.60 0.00
4_I 6_P 0.59 0.00
41_M 140_V 0.59 0.00
162_I 11_P 0.58 0.00
88_L 60_I 0.57 0.00
162_I 134_R 0.56 0.00
50_V 77_G 0.56 0.00
115_V 139_E 0.56 0.00
19_V 140_V 0.56 0.00
143_Q 122_V 0.55 0.00
77_K 54_V 0.54 0.00
176_A 28_T 0.54 0.00
80_S 91_L 0.54 0.00
148_I 109_K 0.53 0.00
68_T 116_L 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.5321 seconds.