OPENSEQ.org
S08 - S13
UniProt: Q5SHQ2 - P80377
Length: 264
Sequences: 1460
Seq/Len: 5.77
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2vqe2vqeHMContact Map
3v2c3v2cHM 3v2eHMContact Map
2uub2uubHMContact Map
2j002j00HM 2j02HMContact Map
3t1y3t1yHMContact Map
4juw4juwHMContact Map
2uua2uuaHMContact Map
4b3m4b3mHMContact Map
2uxc2uxcHMContact Map
4kix4kiyHM 4kj0HM 4kj2HM 4kj4HMContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
105_R 95_G 0.97 0.02
118_V 82_M 0.92 0.01
21_K 8_E 0.91 0.01
28_A 30_A 0.91 0.01
119_L 102_R 0.90 0.01
138_W 8_E 0.87 0.01
7_A 20_T 0.83 0.01
135_C 83_D 0.81 0.01
99_E 59_Y 0.81 0.01
45_I 51_A 0.79 0.01
125_R 81_L 0.79 0.01
66_G 8_E 0.78 0.01
67_P 30_A 0.75 0.01
93_V 55_R 0.72 0.01
47_G 94_R 0.72 0.01
91_R 72_A 0.72 0.01
98_K 23_Y 0.71 0.01
113_S 94_R 0.71 0.01
100_I 54_V 0.71 0.01
111_I 68_G 0.71 0.01
54_D 16_D 0.71 0.01
52_D 58_E 0.70 0.01
133_L 16_D 0.70 0.01
134_I 118_A 0.70 0.01
45_I 103_T 0.70 0.01
103_V 7_V 0.70 0.01
123_E 38_G 0.70 0.01
44_F 105_T 0.69 0.01
98_K 74_V 0.69 0.01
100_I 27_K 0.68 0.01
75_R 15_V 0.68 0.01
27_P 80_R 0.68 0.01
128_G 103_T 0.67 0.01
136_E 46_K 0.66 0.01
80_I 4_I 0.65 0.01
100_I 90_L 0.65 0.01
52_D 51_A 0.65 0.01
126_K 90_L 0.65 0.01
78_Q 102_R 0.65 0.01
134_I 76_A 0.64 0.01
138_W 21_Y 0.64 0.01
52_D 27_K 0.63 0.01
46_K 114_R 0.62 0.01
79_V 88_R 0.62 0.01
14_R 9_I 0.62 0.01
13_I 22_I 0.61 0.01
91_R 93_R 0.61 0.01
29_S 73_E 0.61 0.01
113_S 119_G 0.61 0.01
4_D 67_E 0.61 0.01
96_G 27_K 0.61 0.01
96_G 83_D 0.60 0.01
13_I 4_I 0.60 0.01
24_T 17_V 0.60 0.01
88_K 49_T 0.59 0.01
105_R 41_P 0.59 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0175 seconds.