OPENSEQ.org
S08 - S09
UniProt: Q5SHQ2 - P80374
Length: 266
Sequences: 1513
Seq/Len: 5.91
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2vqe2vqeHIContact Map
3v2c3v2cHI 3v2eHIContact Map
2uub2uubHIContact Map
2j002j00HI 2j02HIContact Map
3t1y3t1yHIContact Map
4juw4juwHIContact Map
2uua2uuaHIContact Map
4b3m4b3mHIContact Map
2uxc2uxcHIContact Map
4kix4kiyHI 4kj0HI 4kj2HI 4kj4HIContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
134_I 46_A 1.03 0.04
19_V 23_N 0.93 0.03
67_P 82_A 0.79 0.02
118_V 94_A 0.78 0.02
52_D 56_L 0.78 0.02
9_M 121_R 0.77 0.02
86_I 52_A 0.76 0.02
105_R 81_I 0.74 0.02
52_D 27_T 0.73 0.02
81_H 41_V 0.72 0.01
100_I 3_Q 0.72 0.01
134_I 62_Y 0.72 0.01
129_V 34_N 0.72 0.01
113_S 118_K 0.72 0.01
47_G 28_V 0.71 0.01
58_Y 23_N 0.70 0.01
104_R 63_I 0.70 0.01
104_R 19_L 0.68 0.01
105_R 70_K 0.68 0.01
9_M 34_N 0.68 0.01
93_V 122_A 0.67 0.01
86_I 117_H 0.67 0.01
86_I 3_Q 0.67 0.01
53_V 106_A 0.66 0.01
52_D 32_D 0.65 0.01
79_V 44_V 0.65 0.01
102_R 35_E 0.64 0.01
81_H 9_R 0.64 0.01
95_V 71_S 0.64 0.01
30_R 32_D 0.64 0.01
3_T 102_L 0.63 0.01
52_D 91_D 0.63 0.01
134_I 43_A 0.63 0.01
35_I 87_Q 0.63 0.01
138_W 109_V 0.62 0.01
54_D 54_D 0.62 0.01
129_V 58_H 0.62 0.01
4_D 111_R 0.62 0.01
88_K 85_L 0.62 0.01
109_I 41_V 0.61 0.01
132_E 104_R 0.61 0.01
111_I 64_T 0.61 0.01
136_E 13_A 0.61 0.01
109_I 95_K 0.61 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0154 seconds.