May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

L05 - L10
UniProt: Q5SHQ0 - Q8VVE3
Length: 355
Sequences: 1255
Seq/Len: 3.62
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoDGContact Map
1vq81vq8DGContact Map
1vqp1vqpDGContact Map
1vqm1vqmDGContact Map
1vql1vqlDGContact Map
1vqk1vqkDGContact Map
1yhq1yhqDGContact Map
1s721s72DGContact Map
1vq91vq9DGContact Map
1vqn1vqnDGContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
177_G 108_K 0.90 0.00
135_L 36_E 0.85 0.00
136_R 48_G 0.79 0.00
37_V 125_L 0.77 0.00
79_N 59_I 0.76 0.00
30_E 82_F 0.75 0.00
68_P 77_P 0.74 0.00
149_V 23_S 0.74 0.00
31_V 130_T 0.73 0.00
151_A 139_V 0.73 0.00
16_R 96_F 0.72 0.00
169_A 116_I 0.72 0.00
47_K 35_K 0.71 0.00
171_A 106_Q 0.71 0.00
57_A 36_E 0.70 0.00
100_W 136_A 0.70 0.00
142_P 129_P 0.69 0.00
78_S 59_I 0.69 0.00
49_D 1_M 0.69 0.00
19_L 116_I 0.69 0.00
145_T 135_R 0.68 0.00
60_L 115_Q 0.68 0.00
82_L 1_M 0.66 0.00
132_N 49_A 0.66 0.00
24_G 49_A 0.66 0.00
176_L 16_N 0.66 0.00
137_E 139_V 0.65 0.00
21_R 18_E 0.64 0.00
106_L 169_E 0.63 0.00
19_L 20_A 0.63 0.00
133_L 119_A 0.63 0.00
67_K 131_M 0.62 0.00
101_I 90_A 0.62 0.00
15_V 9_L 0.62 0.00
15_V 19_R 0.62 0.00
17_P 95_Q 0.61 0.00
118_R 74_L 0.61 0.00
169_A 24_F 0.61 0.00
37_V 115_Q 0.61 0.00
96_R 71_L 0.61 0.00
139_L 27_V 0.61 0.00
120_L 17_L 0.60 0.00
54_E 151_G 0.60 0.00
56_A 131_M 0.60 0.00
37_V 91_K 0.60 0.00
132_N 149_L 0.60 0.00
77_I 47_N 0.60 0.00
107_L 131_M 0.59 0.00
148_M 132_D 0.59 0.00
164_E 73_G 0.59 0.00
27_N 146_M 0.59 0.00
12_Y 127_E 0.58 0.00
78_S 31_G 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.0741 seconds.