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OPENSEQ.org
L05 - S06
UniProt: Q5SHQ0 - Q5SLP8
Length: 283
Sequences: 1105
Seq/Len: 3.99
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2dG 3v2eF 3v2fGContact Map
2j002j00F 2j01G 2j02F 2j03GContact Map
4juw4juwF 4juxGContact Map
4kix4kixF 4kiyF 4kizF 4kj0F 4kj1F 4kj2F 4kj3F 4kj4FContact Map
4kj54kj5F 4kj6F 4kj7F 4kj8F 4kj9F 4kjaF 4kjbF 4kjcFContact Map
3knh3knhF 3kniG 3knjF 3knkGContact Map
3ohc3ohcF 3ohdF 3ohjG 3ohkGContact Map
3uz63uz6I 3uz7I 3uz8G 3uz9GContact Map
3oge3ogeF 3ogyF 3oh5G 3oh7GContact Map
3uyd3uydI 3uyeG 3uyfI 3uygGContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
152_L 30_L 0.96 0.01
17_P 63_Y 0.88 0.01
74_K 58_G 0.85 0.01
156_D 87_R 0.81 0.01
77_I 90_V 0.80 0.01
155_M 37_V 0.79 0.01
155_M 73_N 0.78 0.01
139_L 57_Q 0.77 0.01
122_P 9_V 0.75 0.01
135_L 42_E 0.74 0.01
103_L 41_E 0.74 0.01
15_V 17_S 0.73 0.01
114_I 91_V 0.72 0.01
39_I 80_R 0.72 0.01
72_R 72_V 0.71 0.00
153_R 57_Q 0.70 0.00
64_T 20_A 0.70 0.00
166_D 34_G 0.70 0.00
56_A 1_M 0.68 0.00
86_M 9_V 0.68 0.00
171_A 86_R 0.68 0.00
167_E 63_Y 0.68 0.00
81_K 19_L 0.67 0.00
34_L 6_V 0.67 0.00
81_K 44_G 0.67 0.00
57_A 29_A 0.66 0.00
103_L 7_N 0.65 0.00
162_T 93_S 0.65 0.00
166_D 89_M 0.64 0.00
67_K 10_L 0.64 0.00
48_E 72_V 0.63 0.00
105_K 81_I 0.63 0.00
133_L 62_W 0.62 0.00
155_M 51_P 0.61 0.00
176_L 54_K 0.61 0.00
64_T 42_E 0.61 0.00
132_N 27_Q 0.61 0.00
64_T 88_V 0.61 0.00
79_N 11_N 0.61 0.00
49_D 87_R 0.61 0.00
120_L 40_V 0.60 0.00
76_S 62_W 0.60 0.00
114_I 81_I 0.60 0.00
58_Q 28_R 0.59 0.00
17_P 58_G 0.59 0.00
69_A 83_D 0.59 0.00
28_V 28_R 0.59 0.00
158_A 46_R 0.59 0.00
153_R 52_I 0.59 0.00
176_L 66_E 0.59 0.00
59_E 58_G 0.58 0.00
105_K 73_N 0.58 0.00
41_Q 74_D 0.58 0.00
81_K 41_E 0.57 0.00
149_V 19_L 0.57 0.00
54_E 24_E 0.57 0.00
5_V 75_L 0.57 0.00
84_K 74_D 0.57 0.00
132_N 28_R 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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