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OPENSEQ.org
L05 - S16
UniProt: Q5SHQ0 - Q5SJH3
Length: 270
Sequences: 1278
Seq/Len: 4.84
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2dG 3v2eP 3v2fGContact Map
2j002j00P 2j01G 2j02P 2j03GContact Map
4juw4juwP 4juxGContact Map
4kix4kixF 4kiyP 4kizF 4kj0P 4kj1F 4kj2P 4kj3F 4kj4PContact Map
4kj54kj5F 4kj6P 4kj7F 4kj8P 4kj9F 4kjaP 4kjbF 4kjcPContact Map
3knh3knhP 3kniG 3knjP 3knkGContact Map
3ohc3ohcP 3ohdP 3ohjG 3ohkGContact Map
3uz63uz6S 3uz7S 3uz8G 3uz9GContact Map
3oge3ogeP 3ogyP 3oh5G 3oh7GContact Map
3uyd3uydS 3uyeG 3uyfS 3uygGContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
146_Y 21_V 0.94 0.01
120_L 69_T 0.84 0.01
72_R 18_R 0.77 0.01
50_A 3_K 0.73 0.01
54_E 2_V 0.71 0.01
135_L 68_D 0.66 0.00
136_R 12_K 0.66 0.00
43_L 65_Q 0.65 0.00
47_K 75_R 0.64 0.00
169_A 20_V 0.63 0.00
33_R 73_L 0.63 0.00
76_S 51_V 0.62 0.00
41_Q 80_F 0.62 0.00
49_D 32_Y 0.62 0.00
53_L 60_L 0.62 0.00
71_T 35_K 0.61 0.00
177_G 76_Q 0.61 0.00
177_G 39_Y 0.60 0.00
120_L 60_L 0.58 0.00
96_R 73_L 0.58 0.00
5_V 55_R 0.58 0.00
69_A 53_V 0.58 0.00
169_A 43_K 0.58 0.00
17_P 40_D 0.58 0.00
158_A 33_I 0.57 0.00
131_Y 56_A 0.56 0.00
155_M 11_S 0.56 0.00
27_N 77_A 0.56 0.00
76_S 44_T 0.55 0.00
21_R 52_D 0.55 0.00
152_L 5_R 0.55 0.00
68_P 11_S 0.55 0.00
100_W 57_R 0.54 0.00
114_I 34_E 0.54 0.00
169_A 21_V 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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