May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L05 - L31
UniProt: Q5SHQ0 - Q5SJE1
Length: 253
Sequences: 1124
Seq/Len: 4.63
I_Prob: 0.98
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dG4 3v2fG4Contact Map
2j002j01G4 2j03G4Contact Map
4juw4juxG4Contact Map
4btc4btdG4Contact Map
3uyd3uyeG4 3uygG4Contact Map
3ohc3ohjG4 3ohkG4Contact Map
3knh3kniG4 3knkG4Contact Map
3ohy3ohzG4 3oi1G4Contact Map
3f1e3f1fG4 3f1hG4Contact Map
3v223v23G4 3v25G4Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
108_N 37_S 1.95 0.98
101_I 24_T 1.49 0.91
101_I 9_L 1.33 0.84
101_I 25_Y 1.23 0.77
79_N 57_E 0.86 0.37
67_K 5_I 0.83 0.34
49_D 63_Y 0.83 0.33
118_R 34_E 0.82 0.33
105_K 25_Y 0.82 0.32
105_K 9_L 0.80 0.29
16_R 22_I 0.77 0.27
79_N 56_V 0.76 0.25
145_T 28_K 0.72 0.22
41_Q 48_R 0.70 0.20
156_D 53_E 0.70 0.20
152_L 17_G 0.70 0.20
105_K 27_T 0.70 0.19
104_E 22_I 0.69 0.18
108_N 38_K 0.69 0.18
135_L 30_E 0.67 0.17
137_E 34_E 0.66 0.17
91_R 53_E 0.65 0.15
79_N 60_Q 0.64 0.14
6_A 14_I 0.62 0.13
84_K 56_V 0.61 0.13
98_R 25_Y 0.61 0.12
6_A 22_I 0.61 0.12
76_S 48_R 0.59 0.11
158_A 62_R 0.59 0.11
105_K 65_D 0.59 0.11
107_L 38_K 0.59 0.11
90_L 60_Q 0.59 0.11
115_R 56_V 0.58 0.11
28_V 15_I 0.58 0.11
35_E 38_K 0.58 0.11
84_K 38_K 0.58 0.10
91_R 60_Q 0.57 0.10
108_N 22_I 0.56 0.10
41_Q 19_G 0.56 0.10
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 3.8728 seconds.