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OPENSEQ.org
L05 - S15
UniProt: Q5SHQ0 - Q5SJ76
Length: 271
Sequences: 1217
Seq/Len: 4.56
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cO 3v2dG 3v2eO 3v2fGContact Map
2j002j00O 2j01G 2j02O 2j03GContact Map
4juw4juwO 4juxGContact Map
4kix4kixF 4kiyO 4kizF 4kj0O 4kj1F 4kj2O 4kj3F 4kj4OContact Map
4kj54kj5F 4kj6O 4kj7F 4kj8O 4kj9F 4kjaO 4kjbF 4kjcOContact Map
3knh3knhO 3kniG 3knjO 3knkGContact Map
3ohc3ohcO 3ohdO 3ohjG 3ohkGContact Map
3uz63uz6R 3uz7R 3uz8G 3uz9GContact Map
3oge3ogeO 3ogyO 3oh5G 3oh7GContact Map
3uyd3uydR 3uyeG 3uyfR 3uygGContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
160_V 61_G 0.99 0.02
169_A 3_I 0.92 0.01
27_N 35_R 0.86 0.01
121_N 46_H 0.86 0.01
49_D 18_F 0.84 0.01
12_Y 45_V 0.78 0.01
181_R 43_L 0.76 0.01
142_P 48_K 0.75 0.01
152_L 62_Q 0.74 0.01
132_N 73_E 0.73 0.01
101_I 60_V 0.73 0.01
182_K 16_A 0.71 0.01
54_E 52_S 0.71 0.01
81_K 3_I 0.70 0.01
84_K 25_T 0.70 0.01
105_K 68_R 0.70 0.01
170_R 89_G 0.69 0.01
74_K 46_H 0.69 0.01
108_N 52_S 0.68 0.01
124_S 54_R 0.68 0.01
12_Y 83_E 0.67 0.01
79_N 65_R 0.66 0.01
53_L 8_K 0.66 0.01
149_V 9_Q 0.66 0.01
5_V 11_V 0.65 0.01
146_Y 43_L 0.65 0.01
121_N 57_L 0.65 0.01
79_N 5_K 0.62 0.01
155_M 58_M 0.61 0.01
18_E 89_G 0.60 0.01
76_S 64_R 0.60 0.01
40_N 46_H 0.60 0.01
124_S 31_L 0.59 0.01
165_T 6_E 0.59 0.01
111_L 24_S 0.58 0.01
82_L 75_P 0.58 0.01
41_Q 32_L 0.58 0.01
98_R 64_R 0.58 0.01
132_N 17_R 0.57 0.01
71_T 34_L 0.57 0.01
45_E 87_I 0.56 0.01
41_Q 51_H 0.56 0.01
150_D 53_H 0.56 0.01
103_L 68_R 0.56 0.01
151_A 81_L 0.56 0.01
149_V 77_R 0.55 0.01
120_L 14_E 0.55 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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