May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

L05 - S05
UniProt: Q5SHQ0 - Q5SHQ5
Length: 344
Sequences: 1365
Seq/Len: 4.08
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cE 3v2dG 3v2eE 3v2fGContact Map
2j002j00E 2j01G 2j02E 2j03GContact Map
4juw4juwE 4juxGContact Map
4kix4kixF 4kiyE 4kizF 4kj0E 4kj1F 4kj2E 4kj3F 4kj4EContact Map
4kj54kj5F 4kj6E 4kj7F 4kj8E 4kj9F 4kjaE 4kjbF 4kjcEContact Map
3knh3knhE 3kniG 3knjE 3knkGContact Map
3ohc3ohcE 3ohdE 3ohjG 3ohkGContact Map
3uz63uz6H 3uz7H 3uz8G 3uz9GContact Map
3oge3ogeE 3ogyE 3oh5G 3oh7GContact Map
3uyd3uydH 3uyeG 3uyfH 3uygGContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
114_I 79_E 0.99 0.01
27_N 24_R 0.96 0.01
49_D 56_Q 0.92 0.01
31_V 19_M 0.83 0.01
40_N 48_A 0.83 0.01
178_F 151_L 0.80 0.01
96_R 36_D 0.79 0.01
68_P 78_H 0.76 0.01
39_I 5_D 0.75 0.01
164_E 150_R 0.75 0.01
5_V 7_E 0.73 0.01
30_E 100_V 0.73 0.01
24_G 158_A 0.72 0.01
27_N 127_N 0.72 0.01
8_K 125_S 0.71 0.01
47_K 119_L 0.71 0.01
103_L 137_E 0.70 0.01
169_A 79_E 0.69 0.01
85_G 75_T 0.69 0.01
176_L 83_E 0.68 0.01
74_K 49_P 0.68 0.01
49_D 106_P 0.67 0.01
177_G 10_M 0.66 0.01
150_D 154_G 0.66 0.01
58_Q 150_R 0.66 0.01
147_D 111_E 0.66 0.01
178_F 56_Q 0.66 0.01
57_A 157_H 0.65 0.01
121_N 156_A 0.65 0.01
146_Y 127_N 0.64 0.01
177_G 93_P 0.63 0.01
49_D 53_L 0.63 0.01
109_V 158_A 0.63 0.01
21_R 88_K 0.62 0.01
79_N 71_L 0.62 0.01
27_N 43_L 0.62 0.01
22_R 4_T 0.62 0.01
14_E 113_A 0.62 0.01
9_R 4_T 0.62 0.01
81_K 127_N 0.62 0.01
81_K 9_K 0.62 0.01
43_L 95_A 0.61 0.01
82_L 116_T 0.61 0.01
60_L 125_S 0.61 0.01
53_L 36_D 0.61 0.01
169_A 78_H 0.61 0.01
108_N 9_K 0.61 0.01
114_I 17_A 0.61 0.01
120_L 116_T 0.61 0.01
22_R 65_N 0.61 0.01
40_N 24_R 0.60 0.01
14_E 147_D 0.60 0.01
135_L 24_R 0.60 0.01
107_L 19_M 0.60 0.01
175_L 151_L 0.60 0.01
149_V 3_E 0.60 0.01
107_L 113_A 0.60 0.01
77_I 119_L 0.60 0.01
10_K 154_G 0.59 0.01
180_F 16_T 0.59 0.01
133_L 143_R 0.59 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.3608 seconds.