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OPENSEQ.org
L05 - L18
UniProt: Q5SHQ0 - Q5SHQ4
Length: 294
Sequences: 1209
Seq/Len: 4.20
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoDNContact Map
1vq81vq8DNContact Map
1vqp1vqpDNContact Map
1vqm1vqmDNContact Map
1vql1vqlDNContact Map
1vqk1vqkDNContact Map
1yhq1yhqDNContact Map
1s721s72DNContact Map
1vq91vq9DNContact Map
1vqn1vqnDNContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
27_N 27_S 1.01 0.02
155_M 81_G 1.01 0.02
100_W 27_S 0.91 0.02
146_Y 36_Y 0.84 0.01
31_V 99_K 0.83 0.01
69_A 85_V 0.81 0.01
78_S 91_P 0.79 0.01
177_G 24_L 0.77 0.01
114_I 93_K 0.74 0.01
105_K 56_L 0.74 0.01
44_G 38_Q 0.71 0.01
56_A 66_A 0.69 0.01
169_A 39_I 0.66 0.01
22_R 58_L 0.66 0.01
28_V 111_E 0.64 0.01
115_R 110_L 0.64 0.01
115_R 6_A 0.64 0.01
160_V 86_A 0.64 0.01
101_I 45_G 0.64 0.01
120_L 32_L 0.63 0.01
111_L 86_A 0.63 0.01
74_K 27_S 0.62 0.01
16_R 18_I 0.62 0.01
59_E 81_G 0.62 0.01
106_L 94_Y 0.61 0.01
152_L 35_I 0.60 0.01
178_F 97_R 0.59 0.01
27_N 13_R 0.59 0.01
139_L 11_K 0.59 0.01
109_V 17_R 0.59 0.01
28_V 84_Q 0.59 0.01
86_M 69_V 0.58 0.01
13_E 5_T 0.58 0.01
53_L 111_E 0.58 0.01
31_V 63_T 0.57 0.01
68_P 27_S 0.57 0.01
139_L 14_V 0.57 0.01
167_E 51_A 0.57 0.01
49_D 9_R 0.56 0.01
149_V 62_K 0.56 0.01
164_E 44_K 0.56 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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