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OPENSEQ.org
L05 - L14
UniProt: Q5SHQ0 - Q5SHP8
Length: 304
Sequences: 1320
Seq/Len: 4.40
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoDKContact Map
1vq81vq8DKContact Map
1vqp1vqpDKContact Map
1vqm1vqmDKContact Map
1vql1vqlDKContact Map
1vqk1vqkDKContact Map
1yhq1yhqDKContact Map
1s721s72DKContact Map
1vq91vq9DKContact Map
1vqn1vqnDKContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
132_N 29_N 1.01 0.02
109_V 17_R 0.94 0.02
139_L 41_A 0.94 0.02
105_K 4_P 0.91 0.02
136_R 17_R 0.90 0.02
20_I 65_T 0.85 0.01
177_G 103_A 0.82 0.01
152_L 81_D 0.82 0.01
15_V 43_V 0.80 0.01
156_D 50_G 0.77 0.01
169_A 110_G 0.76 0.01
120_L 111_F 0.76 0.01
167_E 72_P 0.75 0.01
56_A 112_M 0.74 0.01
151_A 110_G 0.73 0.01
43_L 19_I 0.72 0.01
15_V 66_K 0.72 0.01
174_E 90_Q 0.70 0.01
128_R 35_V 0.69 0.01
146_Y 94_R 0.69 0.01
150_D 84_A 0.69 0.01
85_G 96_T 0.68 0.01
150_D 21_C 0.68 0.01
43_L 94_R 0.68 0.01
104_E 66_K 0.68 0.01
149_V 94_R 0.67 0.01
169_A 83_A 0.66 0.01
147_D 40_V 0.66 0.01
79_N 18_K 0.66 0.01
169_A 50_G 0.66 0.01
34_L 9_E 0.66 0.01
53_L 68_E 0.65 0.01
58_Q 69_I 0.64 0.01
10_K 109_K 0.64 0.01
100_W 83_A 0.62 0.01
88_I 45_E 0.62 0.01
10_K 66_K 0.62 0.01
12_Y 29_N 0.61 0.01
174_E 109_K 0.61 0.01
49_D 89_N 0.61 0.01
20_I 29_N 0.61 0.01
121_N 111_F 0.61 0.01
17_P 72_P 0.61 0.01
181_R 32_Y 0.60 0.01
10_K 81_D 0.60 0.01
77_I 69_I 0.60 0.01
24_G 69_I 0.60 0.01
101_I 73_D 0.59 0.01
133_L 94_R 0.59 0.01
118_R 88_N 0.59 0.01
37_V 56_D 0.59 0.01
174_E 47_I 0.59 0.01
84_K 4_P 0.59 0.01
92_V 14_T 0.58 0.01
16_R 90_Q 0.58 0.01
10_K 29_N 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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