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OPENSEQ.org
L05 - S13
UniProt: Q5SHQ0 - P80377
Length: 308
Sequences: 1415
Seq/Len: 4.70
I_Prob: 0.18
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cM 3v2dG 3v2eM 3v2fGContact Map
2j002j00M 2j01G 2j02M 2j03GContact Map
4juw4juwM 4juxGContact Map
4kix4kixF 4kiyM 4kizF 4kj0M 4kj1F 4kj2M 4kj3F 4kj4MContact Map
4kj54kj5F 4kj6M 4kj7F 4kj8M 4kj9F 4kjaM 4kjbF 4kjcMContact Map
3knh3knhM 3kniG 3knjM 3knkGContact Map
3ohc3ohcM 3ohdM 3ohjG 3ohkGContact Map
3uz63uz6P 3uz7P 3uz8G 3uz9GContact Map
3u5b3u5cS 3u5eJ 3u5gS 3u5iJContact Map
3oge3ogeM 3ogyM 3oh5G 3oh7GContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
146_Y 75_A 1.17 0.18
54_E 49_T 1.04 0.12
109_V 39_I 0.91 0.08
77_I 97_P 0.76 0.04
96_R 84_I 0.75 0.04
132_N 65_K 0.72 0.04
162_T 95_G 0.71 0.04
181_R 98_V 0.71 0.04
62_L 30_A 0.71 0.04
16_R 38_G 0.71 0.04
133_L 43_T 0.70 0.04
76_S 113_P 0.70 0.04
149_V 87_Y 0.70 0.03
153_R 72_A 0.69 0.03
43_L 33_A 0.69 0.03
26_Q 17_V 0.69 0.03
21_R 98_V 0.68 0.03
175_L 11_R 0.67 0.03
157_I 38_G 0.66 0.03
17_P 53_V 0.66 0.03
181_R 114_R 0.66 0.03
174_E 59_Y 0.66 0.03
124_S 113_P 0.65 0.03
181_R 75_A 0.65 0.03
181_R 53_V 0.65 0.03
108_N 53_V 0.65 0.03
121_N 63_T 0.65 0.03
10_K 53_V 0.64 0.03
29_W 115_K 0.64 0.03
49_D 45_V 0.64 0.03
20_I 63_T 0.64 0.03
49_D 8_E 0.63 0.03
5_V 56_L 0.63 0.03
72_R 86_C 0.62 0.03
64_T 7_V 0.62 0.03
56_A 104_R 0.62 0.02
78_S 72_A 0.61 0.02
60_L 98_V 0.61 0.02
8_K 41_P 0.61 0.02
142_P 88_R 0.61 0.02
98_R 12_N 0.61 0.02
166_D 39_I 0.61 0.02
149_V 27_K 0.60 0.02
40_N 69_E 0.60 0.02
146_Y 76_A 0.59 0.02
37_V 103_T 0.59 0.02
17_P 52_E 0.59 0.02
31_V 25_I 0.59 0.02
96_R 12_N 0.59 0.02
114_I 123_A 0.59 0.02
169_A 11_R 0.59 0.02
167_E 11_R 0.58 0.02
18_E 115_K 0.57 0.02
60_L 46_K 0.57 0.02
96_R 34_L 0.57 0.02
78_S 69_E 0.56 0.02
13_E 63_T 0.56 0.02
155_M 117_V 0.56 0.02
177_G 95_G 0.56 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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