OPENSEQ.org
L05 - S11
UniProt: Q5SHQ0 - P80376
Length: 311
Sequences: 1276
Seq/Len: 4.18
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cK 3v2dG 3v2eK 3v2fGContact Map
2j002j00K 2j01G 2j02K 2j03GContact Map
4juw4juwK 4juxGContact Map
4kix4kixF 4kiyK 4kizF 4kj0K 4kj1F 4kj2K 4kj3F 4kj4KContact Map
4kj54kj5F 4kj6K 4kj7F 4kj8K 4kj9F 4kjaK 4kjbF 4kjcKContact Map
3knh3knhK 3kniG 3knjK 3knkGContact Map
3ohc3ohcK 3ohdK 3ohjG 3ohkGContact Map
3uz63uz6N 3uz7N 3uz8G 3uz9GContact Map
3u5b3u5cO 3u5eJ 3u5gO 3u5iJContact Map
3oge3ogeK 3ogyK 3oh5G 3oh7GContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
79_N 18_R 0.97 0.01
49_D 15_A 0.94 0.01
50_A 93_Q 0.87 0.01
96_R 103_L 0.86 0.01
20_I 41_T 0.86 0.01
176_L 63_L 0.84 0.01
37_V 79_S 0.83 0.01
114_I 48_I 0.82 0.01
114_I 4_K 0.81 0.01
109_V 22_H 0.80 0.01
41_Q 34_D 0.79 0.01
12_Y 35_P 0.79 0.01
132_N 35_P 0.78 0.01
124_S 114_V 0.78 0.01
43_L 97_A 0.78 0.01
96_R 1_M 0.77 0.01
167_E 23_A 0.77 0.01
81_K 31_T 0.76 0.01
27_N 22_H 0.75 0.01
96_R 95_I 0.75 0.01
73_A 34_D 0.74 0.01
170_R 111_D 0.72 0.01
144_I 18_R 0.72 0.01
99_M 52_G 0.72 0.01
55_K 8_K 0.71 0.01
13_E 6_S 0.71 0.01
87_P 119_C 0.71 0.01
14_E 81_D 0.70 0.01
9_R 21_I 0.70 0.01
147_D 51_K 0.70 0.01
165_T 80_V 0.69 0.01
135_L 82_V 0.69 0.01
156_D 83_I 0.68 0.01
78_S 66_L 0.68 0.01
10_K 3_K 0.68 0.01
52_I 8_K 0.68 0.01
123_N 44_S 0.68 0.01
157_I 59_Y 0.66 0.01
181_R 79_S 0.66 0.01
149_V 1_M 0.66 0.01
20_I 1_M 0.65 0.01
147_D 32_I 0.65 0.01
32_P 115_P 0.65 0.01
37_V 33_T 0.64 0.01
48_E 18_R 0.64 0.01
69_A 78_Q 0.64 0.01
112_P 52_G 0.64 0.01
170_R 13_Q 0.63 0.01
122_P 65_A 0.63 0.01
96_R 39_P 0.63 0.01
48_E 11_K 0.63 0.00
49_D 93_Q 0.62 0.00
170_R 16_S 0.62 0.00
17_P 3_K 0.62 0.00
13_E 45_G 0.62 0.00
61_A 81_D 0.62 0.00
159_V 28_T 0.62 0.00
177_G 103_L 0.62 0.00
15_V 11_K 0.62 0.00
178_F 122_K 0.62 0.00
56_A 19_A 0.61 0.00
86_M 44_S 0.61 0.00
146_Y 31_T 0.61 0.00
57_A 74_A 0.60 0.00
74_K 3_K 0.60 0.00
12_Y 5_P 0.60 0.00
118_R 13_Q 0.60 0.00
107_L 36_D 0.60 0.00
43_L 107_S 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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