OPENSEQ.org
L05 - S09
UniProt: Q5SHQ0 - P80374
Length: 310
Sequences: 1485
Seq/Len: 4.88
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cI 3v2dG 3v2eI 3v2fGContact Map
2j002j00I 2j01G 2j02I 2j03GContact Map
4juw4juwI 4juxGContact Map
4kix4kixF 4kiyI 4kizF 4kj0I 4kj1F 4kj2I 4kj3F 4kj4IContact Map
4kj54kj5F 4kj6I 4kj7F 4kj8I 4kj9F 4kjaI 4kjbF 4kjcIContact Map
3ohc3ohcI 3ohdI 3ohjG 3ohkGContact Map
3knh3knhI 3kniG 3knjI 3knkGContact Map
3uz63uz6L 3uz7L 3uz8G 3uz9GContact Map
3u5b3u5cQ 3u5eJ 3u5gQ 3u5iJContact Map
3oge3ogeI 3ogyI 3oh5G 3oh7GContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
153_R 9_R 0.86 0.00
12_Y 28_V 0.81 0.00
49_D 109_V 0.81 0.00
124_S 88_Y 0.79 0.00
68_P 75_D 0.78 0.00
60_L 98_P 0.78 0.00
21_R 58_H 0.77 0.00
15_V 66_R 0.76 0.00
55_K 83_R 0.76 0.00
34_L 60_D 0.75 0.00
169_A 108_V 0.75 0.00
58_Q 52_A 0.74 0.00
50_A 12_E 0.73 0.00
131_Y 106_A 0.72 0.00
149_V 3_Q 0.72 0.00
120_L 55_A 0.72 0.00
21_R 54_D 0.72 0.00
61_A 52_A 0.71 0.00
12_Y 35_E 0.71 0.00
169_A 53_V 0.71 0.00
104_E 31_Q 0.70 0.00
107_L 70_K 0.69 0.00
22_R 82_A 0.69 0.00
138_Q 9_R 0.69 0.00
182_K 35_E 0.69 0.00
16_R 33_F 0.68 0.00
35_E 82_A 0.68 0.00
14_E 35_E 0.68 0.00
103_L 26_V 0.67 0.00
153_R 123_P 0.67 0.00
13_E 27_T 0.66 0.00
64_T 102_L 0.65 0.00
151_A 35_E 0.65 0.00
41_Q 121_R 0.65 0.00
139_L 18_F 0.65 0.00
98_R 13_A 0.64 0.00
114_I 53_V 0.64 0.00
169_A 28_V 0.64 0.00
181_R 82_A 0.63 0.00
132_N 38_Q 0.61 0.00
153_R 116_K 0.60 0.00
12_Y 43_A 0.60 0.00
41_Q 75_D 0.60 0.00
24_G 35_E 0.59 0.00
33_R 35_E 0.59 0.00
13_E 81_I 0.58 0.00
79_N 77_I 0.58 0.00
156_D 121_R 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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