OPENSEQ.org
L05 - S04
UniProt: Q5SHQ0 - P80373
Length: 391
Sequences: 1201
Seq/Len: 3.11
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2dG 3v2eD 3v2fGContact Map
2j002j00D 2j01G 2j02D 2j03GContact Map
4juw4juwD 4juxGContact Map
4kix4kixF 4kiyD 4kizF 4kj0D 4kj1F 4kj2D 4kj3F 4kj4DContact Map
4kj54kj5F 4kj6D 4kj7F 4kj8D 4kj9F 4kjaD 4kjbF 4kjcDContact Map
3ohc3ohcD 3ohdD 3ohjG 3ohkGContact Map
3knh3knhD 3kniG 3knjD 3knkGContact Map
3uz63uz6G 3uz7G 3uz8G 3uz9GContact Map
3u5b3u5cEJ 3u5eJ 3u5gEJ 3u5iJContact Map
3oge3ogeD 3ogyD 3oh5G 3oh7GContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
26_Q 70_I 0.88 0.00
13_E 181_M 0.79 0.00
15_V 51_P 0.79 0.00
105_K 84_K 0.79 0.00
133_L 45_Q 0.78 0.00
13_E 146_I 0.76 0.00
82_L 78_L 0.75 0.00
90_L 203_V 0.75 0.00
64_T 174_L 0.75 0.00
14_E 203_V 0.74 0.00
22_R 161_N 0.71 0.00
16_R 10_R 0.71 0.00
165_T 92_V 0.70 0.00
176_L 120_L 0.70 0.00
53_L 15_E 0.69 0.00
48_E 158_I 0.69 0.00
27_N 199_N 0.69 0.00
96_R 181_M 0.69 0.00
34_L 52_S 0.67 0.00
177_G 3_R 0.66 0.00
166_D 130_G 0.66 0.00
17_P 146_I 0.66 0.00
103_L 180_G 0.66 0.00
76_S 65_R 0.65 0.00
78_S 171_G 0.64 0.00
27_N 129_N 0.64 0.00
96_R 209_R 0.64 0.00
21_R 187_R 0.63 0.00
140_I 177_D 0.63 0.00
167_E 192_E 0.63 0.00
74_K 135_L 0.63 0.00
37_V 169_K 0.63 0.00
138_Q 120_L 0.63 0.00
61_A 77_N 0.62 0.00
136_R 131_R 0.62 0.00
34_L 204_I 0.61 0.00
15_V 134_D 0.61 0.00
59_E 158_I 0.61 0.00
76_S 139_R 0.61 0.00
107_L 70_I 0.61 0.00
139_L 124_G 0.60 0.00
128_R 121_V 0.60 0.00
149_V 154_N 0.60 0.00
166_D 192_E 0.60 0.00
96_R 7_P 0.60 0.00
176_L 161_N 0.60 0.00
142_P 75_F 0.59 0.00
114_I 49_R 0.59 0.00
15_V 136_P 0.59 0.00
108_N 88_V 0.59 0.00
90_L 121_V 0.59 0.00
77_I 97_L 0.58 0.00
87_P 42_Q 0.58 0.00
64_T 54_Y 0.58 0.00
135_L 3_R 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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