May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L05 - S02
UniProt: Q5SHQ0 - P80371
Length: 438
Sequences: 1442
Seq/Len: 3.56
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dG 3v2eB 3v2fGContact Map
2j002j00B 2j01G 2j02B 2j03GContact Map
4juw4juwB 4juxGContact Map
4kix4kixF 4kiyB 4kizF 4kj0B 4kj1F 4kj2B 4kj3F 4kj4BContact Map
4kj54kj5F 4kj6B 4kj7F 4kj8B 4kj9F 4kjaB 4kjbF 4kjcBContact Map
3knh3knhB 3kniG 3knjB 3knkGContact Map
3ohc3ohcB 3ohdB 3ohjG 3ohkGContact Map
3uz63uz6E 3uz7E 3uz8G 3uz9GContact Map
3u5b3u5cA 3u5eJ 3u5gA 3u5iJContact Map
3oge3ogeB 3ogyB 3oh5G 3oh7GContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
74_K 162_I 0.81 0.00
61_A 186_A 0.81 0.00
169_A 139_K 0.81 0.00
130_N 206_D 0.80 0.00
64_T 139_K 0.80 0.00
49_D 91_P 0.79 0.00
169_A 118_L 0.79 0.00
88_I 13_A 0.78 0.00
96_R 68_I 0.78 0.00
131_Y 141_E 0.76 0.00
105_K 66_G 0.74 0.00
10_K 143_E 0.73 0.00
110_A 186_A 0.72 0.00
182_K 225_A 0.71 0.00
9_R 147_K 0.71 0.00
149_V 223_I 0.70 0.00
43_L 113_H 0.70 0.00
13_E 88_A 0.70 0.00
9_R 21_R 0.70 0.00
81_K 101_M 0.69 0.00
114_I 95_Q 0.69 0.00
20_I 30_R 0.68 0.00
67_K 42_I 0.68 0.00
62_L 31_Y 0.68 0.00
68_P 118_L 0.67 0.00
149_V 11_L 0.67 0.00
182_K 118_L 0.67 0.00
137_E 150_S 0.67 0.00
52_I 203_G 0.66 0.00
135_L 60_D 0.66 0.00
77_I 43_D 0.66 0.00
103_L 82_R 0.66 0.00
77_I 63_M 0.66 0.00
81_K 203_G 0.66 0.00
96_R 159_P 0.65 0.00
182_K 82_R 0.65 0.00
68_P 57_F 0.65 0.00
9_R 113_H 0.65 0.00
149_V 148_Y 0.65 0.00
135_L 225_A 0.65 0.00
96_R 67_T 0.65 0.00
9_R 88_A 0.64 0.00
151_A 222_I 0.64 0.00
124_S 186_A 0.64 0.00
13_E 164_V 0.64 0.00
58_Q 184_V 0.64 0.00
82_L 160_D 0.64 0.00
17_P 137_R 0.64 0.00
81_K 153_R 0.64 0.00
34_L 171_A 0.64 0.00
48_E 108_I 0.63 0.00
16_R 186_A 0.63 0.00
164_E 181_F 0.62 0.00
111_L 82_R 0.62 0.00
90_L 221_L 0.62 0.00
53_L 160_D 0.62 0.00
105_K 155_L 0.61 0.00
176_L 40_H 0.61 0.00
114_I 153_R 0.61 0.00
78_S 135_Q 0.61 0.00
17_P 168_T 0.61 0.00
33_R 49_E 0.61 0.00
121_N 201_I 0.61 0.00
149_V 88_A 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4009 seconds.