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OPENSEQ.org
L05 - L16
UniProt: Q5SHQ0 - P60489
Length: 323
Sequences: 1203
Seq/Len: 3.81
I_Prob: 0.07
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoDHContact Map
1vq81vq8DHContact Map
1vqp1vqpDHContact Map
1vqm1vqmDHContact Map
1vql1vqlDHContact Map
1vqk1vqkDHContact Map
1yhq1yhqDHContact Map
1s721s72DHContact Map
1vq91vq9DHContact Map
1vqn1vqnDHContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
96_R 107_A 1.12 0.07
48_E 45_Q 1.01 0.05
47_K 45_Q 1.00 0.05
53_L 72_K 0.98 0.05
68_P 35_V 0.90 0.04
137_E 98_K 0.84 0.03
105_K 92_G 0.83 0.03
37_V 40_A 0.82 0.03
50_A 81_V 0.78 0.02
145_T 115_M 0.77 0.02
73_A 54_M 0.77 0.02
48_E 29_F 0.76 0.02
79_N 45_Q 0.76 0.02
27_N 12_Q 0.75 0.02
150_D 58_F 0.73 0.02
174_E 110_T 0.73 0.02
27_N 27_V 0.73 0.02
72_R 110_T 0.72 0.02
100_W 131_I 0.71 0.02
81_K 77_K 0.71 0.02
27_N 11_K 0.70 0.02
52_I 104_F 0.69 0.02
34_L 49_A 0.69 0.02
17_P 102_V 0.67 0.01
182_K 103_M 0.67 0.01
76_S 44_A 0.65 0.01
150_D 61_G 0.65 0.01
99_M 114_A 0.65 0.01
156_D 93_Y 0.63 0.01
27_N 13_Q 0.63 0.01
139_L 3_M 0.63 0.01
19_L 16_R 0.62 0.01
11_Y 54_M 0.62 0.01
155_M 93_Y 0.61 0.01
77_I 85_K 0.61 0.01
96_R 9_Y 0.61 0.01
136_R 34_L 0.61 0.01
118_R 99_P 0.61 0.01
164_E 18_K 0.60 0.01
109_V 81_V 0.60 0.01
71_T 27_V 0.60 0.01
170_R 127_I 0.60 0.01
121_N 68_I 0.60 0.01
175_L 17_L 0.59 0.01
101_I 77_K 0.59 0.01
91_R 5_R 0.59 0.01
114_I 67_R 0.59 0.01
49_D 22_K 0.58 0.01
149_V 96_V 0.57 0.01
140_I 130_K 0.57 0.01
21_R 74_Y 0.57 0.01
133_L 96_V 0.57 0.01
33_R 44_A 0.57 0.01
90_L 59_R 0.57 0.01
157_I 56_R 0.57 0.01
39_I 35_V 0.56 0.01
79_N 7_M 0.56 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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