May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L24 - S13
UniProt: Q5SHP9 - P80377
Length: 236
Sequences: 1288
Seq/Len: 5.72
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cM 3v2dY 3v2eM 3v2fYContact Map
2j002j00M 2j01Y 2j02M 2j03YContact Map
4juw4juwM 4juxYContact Map
4kix4kixU 4kiyM 4kizU 4kj0M 4kj1U 4kj2M 4kj3U 4kj4MContact Map
4kj54kj5U 4kj6M 4kj7U 4kj8M 4kj9U 4kjaM 4kjbU 4kjcMContact Map
3ohc3ohcM 3ohdM 3ohjY 3ohkYContact Map
3knh3knhM 3kniY 3knjM 3knkYContact Map
3uz63uz6P 3uz7P 3uz8U 3uz9UContact Map
3u5b3u5cS 3u5eY 3u5gS 3u5iYContact Map
3oge3ogeM 3ogyM 3oh5Y 3oh7YContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
40_E 34_L 0.80 0.00
54_K 18_A 0.74 0.00
48_A 72_A 0.70 0.00
10_G 44_R 0.68 0.00
105_A 95_G 0.67 0.00
27_V 4_I 0.65 0.00
101_K 113_P 0.64 0.00
35_Y 32_E 0.61 0.00
49_V 116_T 0.61 0.00
66_P 94_R 0.60 0.00
101_K 94_R 0.60 0.00
50_R 78_I 0.60 0.00
17_S 37_T 0.59 0.00
59_G 6_G 0.59 0.00
16_A 25_I 0.59 0.00
31_L 18_A 0.59 0.00
41_G 104_R 0.59 0.00
86_R 30_A 0.58 0.00
107_D 115_K 0.58 0.00
50_R 40_N 0.57 0.00
72_V 46_K 0.57 0.00
24_V 82_M 0.57 0.00
90_L 62_N 0.56 0.00
10_G 95_G 0.56 0.00
52_S 44_R 0.56 0.00
45_V 7_V 0.55 0.00
48_A 78_I 0.55 0.00
30_V 36_K 0.54 0.00
54_K 65_K 0.54 0.00
36_A 47_D 0.54 0.00
74_P 31_K 0.53 0.00
43_N 17_V 0.53 0.00
64_E 110_R 0.53 0.00
89_F 41_P 0.53 0.00
47_K 99_R 0.53 0.00
29_E 34_L 0.53 0.00
16_A 47_D 0.53 0.00
45_V 58_E 0.53 0.00
105_A 75_A 0.53 0.00
48_A 5_A 0.52 0.00
106_L 46_K 0.52 0.00
37_V 46_K 0.52 0.00
51_V 76_A 0.51 0.00
84_R 87_Y 0.51 0.00
9_K 16_D 0.51 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.29 seconds.