May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L24 - S04
UniProt: Q5SHP9 - P80373
Length: 319
Sequences: 1245
Seq/Len: 4.02
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2dY 3v2eD 3v2fYContact Map
2j002j00D 2j01Y 2j02D 2j03YContact Map
4juw4juwD 4juxYContact Map
4kix4kixU 4kiyD 4kizU 4kj0D 4kj1U 4kj2D 4kj3U 4kj4DContact Map
4kj54kj5U 4kj6D 4kj7U 4kj8D 4kj9U 4kjaD 4kjbU 4kjcDContact Map
3knh3knhD 3kniY 3knjD 3knkYContact Map
3ohc3ohcD 3ohdD 3ohjY 3ohkYContact Map
3uz63uz6G 3uz7G 3uz8U 3uz9UContact Map
3u5b3u5cJ 3u5eY 3u5gJ 3u5iYContact Map
3oge3ogeD 3ogyD 3oh5Y 3oh7YContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
29_E 146_I 0.81 0.00
10_G 38_Y 0.79 0.00
36_A 46_K 0.76 0.00
47_K 179_E 0.74 0.00
9_K 76_R 0.72 0.00
47_K 131_R 0.64 0.00
61_I 186_L 0.64 0.00
49_V 51_P 0.64 0.00
30_V 134_D 0.63 0.00
51_V 43_H 0.62 0.00
47_K 77_N 0.61 0.00
15_V 182_K 0.61 0.00
46_K 17_V 0.61 0.00
50_R 150_E 0.60 0.00
37_V 154_N 0.60 0.00
30_V 124_G 0.60 0.00
36_A 184_K 0.59 0.00
62_E 170_V 0.58 0.00
100_A 35_R 0.58 0.00
8_K 201_Q 0.58 0.00
53_P 134_D 0.58 0.00
105_A 184_K 0.57 0.00
50_R 114_R 0.57 0.00
77_P 179_E 0.56 0.00
47_K 156_E 0.56 0.00
65_A 204_I 0.56 0.00
81_K 11_L 0.56 0.00
32_P 124_G 0.56 0.00
85_V 35_R 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4048 seconds.