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OPENSEQ.org
L24 - S02
UniProt: Q5SHP9 - P80371
Length: 366
Sequences: 1233
Seq/Len: 3.74
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dY 3v2eB 3v2fYContact Map
2j002j00B 2j01Y 2j02B 2j03YContact Map
4juw4juwB 4juxYContact Map
4kix4kixU 4kiyB 4kizU 4kj0B 4kj1U 4kj2B 4kj3U 4kj4BContact Map
4kj54kj5U 4kj6B 4kj7U 4kj8B 4kj9U 4kjaB 4kjbU 4kjcBContact Map
3ohc3ohcB 3ohdB 3ohjY 3ohkYContact Map
3knh3knhB 3kniY 3knjB 3knkYContact Map
3uz63uz6E 3uz7E 3uz8U 3uz9UContact Map
3u5b3u5cA 3u5eY 3u5gA 3u5iYContact Map
3oge3ogeB 3ogyB 3oh5Y 3oh7YContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
81_K 181_F 0.93 0.01
41_G 112_V 0.86 0.00
77_P 128_E 0.82 0.00
47_K 35_E 0.76 0.00
67_L 186_A 0.72 0.00
53_P 200_I 0.72 0.00
8_K 108_I 0.71 0.00
9_K 187_L 0.70 0.00
45_V 105_F 0.68 0.00
46_K 214_I 0.67 0.00
50_R 51_L 0.66 0.00
24_V 178_R 0.66 0.00
5_M 111_R 0.66 0.00
95_K 162_I 0.66 0.00
89_F 52_E 0.66 0.00
15_V 92_Y 0.65 0.00
28_K 81_V 0.64 0.00
10_G 148_Y 0.64 0.00
80_G 133_K 0.64 0.00
63_K 56_R 0.63 0.00
64_E 121_L 0.63 0.00
63_K 133_K 0.62 0.00
17_S 121_L 0.62 0.00
64_E 170_E 0.61 0.00
4_K 66_G 0.60 0.00
15_V 193_D 0.59 0.00
81_K 101_M 0.59 0.00
49_V 146_Q 0.58 0.00
32_P 43_D 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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