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OPENSEQ.org
L24 - S07
UniProt: Q5SHP9 - P17291
Length: 266
Sequences: 1231
Seq/Len: 4.77
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2dY 3v2eG 3v2fYContact Map
2j002j00G 2j01Y 2j02G 2j03YContact Map
4juw4juwG 4juxYContact Map
4kix4kixU 4kiyG 4kizU 4kj0G 4kj1U 4kj2G 4kj3U 4kj4GContact Map
4kj54kj5U 4kj6G 4kj7U 4kj8G 4kj9U 4kjaG 4kjbU 4kjcGContact Map
3knh3knhG 3kniY 3knjG 3knkYContact Map
3ohc3ohcG 3ohdG 3ohjY 3ohkYContact Map
3uz63uz6J 3uz7J 3uz8U 3uz9UContact Map
3oge3ogeG 3ogyG 3oh5Y 3oh7YContact Map
3uyd3uydJ 3uyeU 3uyfJ 3uygUContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
71_K 76_R 0.85 0.00
40_E 152_A 0.82 0.00
48_A 142_E 0.81 0.00
88_K 53_K 0.79 0.00
42_V 138_K 0.76 0.00
27_V 32_R 0.74 0.00
72_V 30_I 0.71 0.00
62_E 143_R 0.69 0.00
6_H 37_N 0.69 0.00
105_A 7_A 0.68 0.00
69_A 29_K 0.67 0.00
38_I 59_L 0.67 0.00
48_A 39_A 0.65 0.00
30_V 30_I 0.65 0.00
42_V 125_M 0.65 0.00
63_K 146_E 0.64 0.00
26_K 14_P 0.64 0.00
23_R 25_A 0.64 0.00
82_P 19_G 0.63 0.00
31_L 61_V 0.63 0.00
60_F 142_E 0.62 0.00
36_A 104_L 0.61 0.00
38_I 112_P 0.60 0.00
106_L 8_E 0.60 0.00
35_Y 48_K 0.60 0.00
52_S 76_R 0.59 0.00
38_I 45_D 0.58 0.00
106_L 122_H 0.58 0.00
24_V 152_A 0.57 0.00
29_E 64_Q 0.57 0.00
69_A 147_A 0.56 0.00
29_E 80_V 0.56 0.00
107_D 115_R 0.55 0.00
61_I 119_R 0.55 0.00
22_G 98_S 0.55 0.00
59_G 2_A 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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