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OPENSEQ.org

L14 - L36
UniProt: Q5SHP8 - Q5SHR2
Length: 159
Sequences: 599
Seq/Len: 3.77
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dO9 3v2fO9Contact Map
2j002j01O9 2j03O9Contact Map
4juw4juxO9Contact Map
4kix4kixK4 4kizK4 4kj1K4 4kj3K4Contact Map
4kj54kj5K4 4kj7K4 4kj9K4 4kjbK4Contact Map
2zjr2zjrH4Contact Map
4btc4btdO9Contact Map
4gd13r8sK4 3r8tK4Contact Map
3knh3kniO9 3knkO9Contact Map
3v223v23O9 3v25O9Contact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
80_D 4_R 1.02 0.02
63_V 35_R 0.98 0.02
84_A 5_A 0.92 0.01
70_K 10_I 0.91 0.01
84_A 31_K 0.90 0.01
45_E 31_K 0.82 0.01
16_A 37_G 0.81 0.01
98_V 4_R 0.80 0.01
51_A 12_D 0.79 0.01
91_L 35_R 0.79 0.01
98_V 23_V 0.79 0.01
103_A 4_R 0.79 0.01
29_N 22_R 0.79 0.01
75_S 17_I 0.79 0.01
47_I 12_D 0.78 0.01
40_V 29_N 0.78 0.01
111_F 28_E 0.77 0.01
110_G 31_K 0.75 0.01
39_I 35_R 0.74 0.01
48_P 31_K 0.74 0.01
52_V 8_K 0.73 0.01
77_I 21_G 0.73 0.01
108_E 31_K 0.71 0.01
108_E 29_N 0.70 0.01
17_R 28_E 0.70 0.01
5_Q 13_K 0.69 0.01
57_V 12_D 0.69 0.01
77_I 25_V 0.69 0.01
67_K 10_I 0.68 0.01
63_V 21_G 0.68 0.01
86_I 16_V 0.67 0.01
81_D 31_K 0.67 0.01
27_G 8_K 0.67 0.01
89_N 20_H 0.67 0.01
83_A 10_I 0.65 0.01
57_V 4_R 0.65 0.01
34_T 4_R 0.65 0.01
81_D 13_K 0.65 0.01
35_V 4_R 0.64 0.01
35_V 2_K 0.64 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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