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OPENSEQ.org

L14 - S17
UniProt: Q5SHP8 - Q5SHP7
Length: 227
Sequences: 1150
Seq/Len: 5.67
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cQ 3v2dO 3v2eQ 3v2fOContact Map
2j002j00Q 2j01O 2j02Q 2j03OContact Map
4juw4juwQ 4juxOContact Map
4kix4kixK 4kiyQ 4kizK 4kj0Q 4kj1K 4kj2Q 4kj3K 4kj4QContact Map
4kj54kj5K 4kj6Q 4kj7K 4kj8Q 4kj9K 4kjaQ 4kjbK 4kjcQContact Map
3ohc3ohcQ 3ohdQ 3ohjO 3ohkOContact Map
3knh3knhQ 3kniO 3knjQ 3knkOContact Map
3uz63uz6T 3uz7T 3uz8N 3uz9NContact Map
3oge3ogeQ 3ogyQ 3oh5O 3oh7OContact Map
3uyd3uydT 3uyeN 3uyfT 3uygNContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
45_E 67_K 1.02 0.04
17_R 7_T 1.01 0.03
14_T 40_K 0.85 0.02
110_G 26_Q 0.79 0.02
77_I 67_K 0.78 0.02
14_T 35_V 0.75 0.01
43_V 48_E 0.75 0.01
76_A 60_I 0.74 0.01
92_E 67_K 0.73 0.01
103_A 59_I 0.73 0.01
28_S 5_V 0.72 0.01
92_E 35_V 0.72 0.01
54_E 71_F 0.72 0.01
93_P 23_V 0.70 0.01
24_V 34_K 0.69 0.01
87_I 18_T 0.69 0.01
54_E 70_R 0.68 0.01
6_T 52_K 0.68 0.01
41_A 35_V 0.68 0.01
7_Y 33_G 0.68 0.01
68_E 3_K 0.66 0.01
56_D 22_L 0.66 0.01
111_F 27_F 0.66 0.01
91_L 3_K 0.65 0.01
114_I 69_K 0.65 0.01
47_I 67_K 0.65 0.01
98_V 15_M 0.65 0.01
34_T 68_R 0.65 0.01
45_E 35_V 0.64 0.01
92_E 40_K 0.64 0.01
91_L 68_R 0.63 0.01
89_N 37_K 0.63 0.01
78_R 30_P 0.63 0.01
62_V 9_V 0.63 0.01
88_N 81_R 0.63 0.01
110_G 3_K 0.62 0.01
72_P 37_K 0.62 0.01
122_L 60_I 0.61 0.01
47_I 35_V 0.60 0.01
19_I 11_V 0.60 0.01
115_V 40_K 0.60 0.01
29_N 68_R 0.60 0.01
111_F 32_Y 0.59 0.01
98_V 33_G 0.59 0.01
78_R 72_R 0.59 0.01
98_V 60_I 0.59 0.01
83_A 1_M 0.59 0.01
51_A 3_K 0.58 0.01
14_T 26_Q 0.58 0.01
57_V 48_E 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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