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OPENSEQ.org
L14 - S20
UniProt: Q5SHP8 - P80380
Length: 228
Sequences: 1012
Seq/Len: 4.87
I_Prob: 0.55
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cT 3v2dO 3v2eT 3v2fOContact Map
2j002j00T 2j01O 2j02T 2j03OContact Map
4juw4juwT 4juxOContact Map
4kix4kixK 4kiyT 4kizK 4kj0T 4kj1K 4kj2T 4kj3K 4kj4TContact Map
4kj54kj5K 4kj6T 4kj7K 4kj8T 4kj9K 4kjaT 4kjbK 4kjcTContact Map
3knh3knhT 3kniO 3knjT 3knkOContact Map
3ohc3ohcT 3ohdT 3ohjO 3ohkOContact Map
3uz63uz6W 3uz7W 3uz8N 3uz9NContact Map
3oge3ogeT 3ogyT 3oh5O 3oh7OContact Map
3uyd3uydW 3uyeN 3uyfW 3uygNContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
94_R 81_K 1.32 0.55
98_V 63_I 1.06 0.31
94_R 64_D 0.96 0.23
84_A 59_A 0.95 0.22
115_V 44_A 0.90 0.19
92_E 9_N 0.85 0.16
108_E 81_K 0.80 0.13
87_I 41_I 0.79 0.12
50_G 34_K 0.78 0.12
94_R 84_L 0.78 0.11
110_G 67_A 0.78 0.11
94_R 73_H 0.77 0.11
33_A 86_R 0.76 0.11
42_S 32_A 0.75 0.10
77_I 34_K 0.74 0.10
62_V 81_K 0.73 0.10
113_K 80_R 0.73 0.10
62_V 59_A 0.71 0.09
19_I 12_A 0.71 0.08
62_V 20_L 0.70 0.08
89_N 51_E 0.70 0.08
78_R 39_K 0.69 0.08
39_I 41_I 0.69 0.08
29_N 45_Q 0.68 0.07
17_R 57_R 0.68 0.07
113_K 65_K 0.67 0.07
38_V 90_Q 0.67 0.07
32_Y 86_R 0.67 0.07
47_I 11_S 0.67 0.07
87_I 21_K 0.67 0.07
66_K 41_I 0.66 0.07
14_T 61_S 0.66 0.07
34_T 31_S 0.65 0.06
62_V 84_L 0.64 0.06
70_K 73_H 0.64 0.06
43_V 91_L 0.63 0.06
24_V 72_L 0.63 0.06
110_G 81_K 0.63 0.06
109_K 27_K 0.63 0.06
51_A 12_A 0.62 0.06
88_N 8_R 0.61 0.05
42_S 37_S 0.61 0.05
81_D 46_E 0.61 0.05
65_T 38_K 0.61 0.05
103_A 89_R 0.60 0.05
35_V 27_K 0.60 0.05
58_V 66_A 0.59 0.05
80_D 58_K 0.59 0.05
69_I 71_T 0.59 0.05
72_P 53_L 0.59 0.05
93_P 30_K 0.58 0.05
83_A 74_K 0.58 0.05
111_F 54_K 0.58 0.04
86_I 42_Q 0.58 0.04
23_R 16_H 0.58 0.04
103_A 11_S 0.57 0.04
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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