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OPENSEQ.org
L14 - S13
UniProt: Q5SHP8 - P80377
Length: 248
Sequences: 1182
Seq/Len: 4.82
I_Prob: 0.08
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cM 3v2dO 3v2eM 3v2fOContact Map
2j002j00M 2j01O 2j02M 2j03OContact Map
4juw4juwM 4juxOContact Map
4kix4kixK 4kiyM 4kizK 4kj0M 4kj1K 4kj2M 4kj3K 4kj4MContact Map
4kj54kj5K 4kj6M 4kj7K 4kj8M 4kj9K 4kjaM 4kjbK 4kjcMContact Map
3ohc3ohcM 3ohdM 3ohjO 3ohkOContact Map
3knh3knhM 3kniO 3knjM 3knkOContact Map
3uz63uz6P 3uz7P 3uz8N 3uz9NContact Map
3u5b3u5cS 3u5eV 3u5gS 3u5iVContact Map
3oge3ogeM 3ogyM 3oh5O 3oh7OContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
83_A 45_V 1.09 0.08
88_N 83_D 1.05 0.07
19_I 115_K 0.92 0.04
14_T 102_R 0.90 0.04
111_F 18_A 0.84 0.03
113_K 88_R 0.84 0.03
109_K 54_V 0.83 0.03
103_A 8_E 0.82 0.03
108_E 114_R 0.81 0.03
9_E 35_E 0.81 0.03
14_T 119_G 0.79 0.03
17_R 120_K 0.79 0.03
90_Q 95_G 0.79 0.03
14_T 58_E 0.79 0.03
118_A 68_G 0.77 0.03
76_A 8_E 0.76 0.03
91_L 115_K 0.75 0.03
91_L 30_A 0.75 0.03
110_G 56_L 0.74 0.02
29_N 59_Y 0.73 0.02
110_G 12_N 0.73 0.02
62_V 82_M 0.73 0.02
72_P 18_A 0.72 0.02
72_P 27_K 0.72 0.02
19_I 121_K 0.72 0.02
109_K 11_R 0.71 0.02
33_A 94_R 0.71 0.02
34_T 63_T 0.70 0.02
49_R 12_N 0.69 0.02
94_R 116_T 0.69 0.02
42_S 39_I 0.69 0.02
62_V 46_K 0.68 0.02
92_E 119_G 0.67 0.02
39_I 111_K 0.67 0.02
35_V 81_L 0.66 0.02
90_Q 12_N 0.66 0.02
106_L 17_V 0.66 0.02
62_V 99_R 0.66 0.02
109_K 86_C 0.65 0.02
103_A 30_A 0.65 0.02
72_P 52_E 0.65 0.02
49_R 8_E 0.65 0.02
89_N 62_N 0.65 0.02
54_E 66_L 0.64 0.02
110_G 114_R 0.64 0.02
77_I 55_R 0.64 0.02
86_I 50_E 0.64 0.02
28_S 51_A 0.64 0.02
86_I 104_R 0.64 0.02
67_K 9_I 0.63 0.01
92_E 18_A 0.63 0.01
108_E 84_I 0.62 0.01
41_A 44_R 0.62 0.01
98_V 6_G 0.62 0.01
115_V 46_K 0.62 0.01
109_K 62_N 0.61 0.01
45_E 118_A 0.61 0.01
113_K 64_W 0.61 0.01
110_G 104_R 0.61 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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