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OPENSEQ.org
L14 - S02
UniProt: Q5SHP8 - P80371
Length: 378
Sequences: 1358
Seq/Len: 3.88
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dO 3v2eB 3v2fOContact Map
2j002j00B 2j01O 2j02B 2j03OContact Map
4juw4juwB 4juxOContact Map
4kix4kixK 4kiyB 4kizK 4kj0B 4kj1K 4kj2B 4kj3K 4kj4BContact Map
4kj54kj5K 4kj6B 4kj7K 4kj8B 4kj9K 4kjaB 4kjbK 4kjcBContact Map
3knh3knhB 3kniO 3knjB 3knkOContact Map
3ohc3ohcB 3ohdB 3ohjO 3ohkOContact Map
3uz63uz6E 3uz7E 3uz8N 3uz9NContact Map
3u5b3u5cA 3u5eV 3u5gA 3u5iVContact Map
3oge3ogeB 3ogyB 3oh5O 3oh7OContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
21_C 101_M 1.04 0.03
56_D 116_E 1.00 0.03
57_V 211_I 0.97 0.02
86_I 113_H 0.91 0.02
81_D 142_L 0.90 0.02
101_P 134_E 0.85 0.02
59_K 43_D 0.83 0.01
17_R 160_D 0.82 0.01
93_P 151_G 0.82 0.01
77_I 150_S 0.82 0.01
111_F 230_V 0.82 0.01
61_V 21_R 0.81 0.01
23_R 34_A 0.81 0.01
14_T 69_L 0.80 0.01
45_E 35_E 0.80 0.01
35_V 7_V 0.79 0.01
29_N 226_R 0.78 0.01
56_D 120_A 0.78 0.01
98_V 179_K 0.77 0.01
14_T 87_R 0.77 0.01
62_V 137_R 0.77 0.01
84_A 185_I 0.76 0.01
109_K 118_L 0.75 0.01
17_R 60_D 0.75 0.01
68_E 110_Q 0.74 0.01
110_G 124_S 0.74 0.01
29_N 218_A 0.74 0.01
58_V 68_I 0.74 0.01
94_R 51_L 0.73 0.01
6_T 5_I 0.73 0.01
14_T 51_L 0.73 0.01
73_D 13_A 0.73 0.01
111_F 127_I 0.72 0.01
69_I 201_I 0.72 0.01
32_Y 144_R 0.72 0.01
33_A 216_S 0.71 0.01
77_I 43_D 0.71 0.01
17_R 105_F 0.71 0.01
29_N 143_E 0.71 0.01
17_R 157_R 0.71 0.01
29_N 215_L 0.70 0.01
89_N 92_Y 0.70 0.01
75_S 177_A 0.70 0.01
109_K 168_T 0.70 0.01
83_A 53_R 0.70 0.01
43_V 57_F 0.69 0.01
29_N 113_H 0.69 0.01
115_V 192_S 0.69 0.01
91_L 148_Y 0.69 0.01
62_V 135_Q 0.69 0.01
109_K 136_V 0.69 0.01
56_D 57_F 0.68 0.01
5_Q 150_S 0.68 0.01
87_I 140_H 0.68 0.01
17_R 67_T 0.68 0.01
73_D 68_I 0.68 0.01
109_K 217_R 0.67 0.01
45_E 200_I 0.67 0.01
65_T 120_A 0.67 0.01
66_K 57_F 0.67 0.01
51_A 64_R 0.67 0.01
102_V 33_Y 0.67 0.01
90_Q 78_Q 0.66 0.01
68_E 106_K 0.66 0.01
87_I 167_P 0.66 0.01
81_D 128_E 0.66 0.01
120_E 194_P 0.66 0.01
7_Y 5_I 0.65 0.01
45_E 123_A 0.65 0.01
21_C 184_V 0.65 0.01
7_Y 141_E 0.64 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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