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OPENSEQ.org
L29 - S16
UniProt: Q5SHP6 - Q5SJH3
Length: 160
Sequences: 1135
Seq/Len: 7.62
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2d2 3v2eP 3v2f2Contact Map
2j002j00P 2j012 2j02P 2j032Contact Map
4juw4juwP 4jux2Contact Map
4kix4kixY 4kiyP 4kizY 4kj0P 4kj1Y 4kj2P 4kj3Y 4kj4PContact Map
4kj54kj5Y 4kj6P 4kj7Y 4kj8P 4kj9Y 4kjaP 4kjbY 4kjcPContact Map
3knh3knhP 3kni2 3knjP 3knk2Contact Map
3ohc3ohcP 3ohdP 3ohj2 3ohk2Contact Map
3uz63uz6S 3uz7S 3uz8W 3uz9WContact Map
3oge3ogeP 3ogyP 3oh52 3oh72Contact Map
3uyd3uydS 3uyeW 3uyfS 3uygWContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
42_G 15_P 0.85 0.00
64_L 82_Q 0.82 0.00
54_K 18_R 0.70 0.00
20_E 48_W 0.70 0.00
45_S 35_K 0.69 0.00
38_Q 65_Q 0.67 0.00
55_R 34_E 0.67 0.00
60_L 66_P 0.67 0.00
47_N 38_Y 0.64 0.00
45_S 1_M 0.64 0.00
39_A 75_R 0.62 0.00
36_R 73_L 0.61 0.00
53_L 24_A 0.61 0.00
67_K 7_A 0.60 0.00
17_S 19_I 0.60 0.00
31_E 8_R 0.59 0.00
39_A 2_V 0.58 0.00
63_V 22_T 0.57 0.00
29_K 72_R 0.56 0.00
48_H 1_M 0.56 0.00
51_R 27_K 0.55 0.00
42_G 33_I 0.55 0.00
34_E 21_V 0.55 0.00
46_Q 39_Y 0.55 0.00
48_H 72_R 0.54 0.00
14_R 42_R 0.54 0.00
17_S 15_P 0.54 0.00
24_L 69_T 0.53 0.00
22_E 36_I 0.52 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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