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OPENSEQ.org
L29 - S12
UniProt: Q5SHP6 - Q5SHN3
Length: 204
Sequences: 793
Seq/Len: 4.20
I_Prob: 0.05
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cL 3v2d2 3v2eL 3v2f2Contact Map
2j002j00L 2j012 2j02L 2j032Contact Map
4juw4juwL 4jux2Contact Map
4kix4kixY 4kiyL 4kizY 4kj0L 4kj1Y 4kj2L 4kj3Y 4kj4LContact Map
4kj54kj5Y 4kj6L 4kj7Y 4kj8L 4kj9Y 4kjaL 4kjbY 4kjcLContact Map
3knh3knhL 3kni2 3knjL 3knk2Contact Map
3ohc3ohcL 3ohdL 3ohj2 3ohk2Contact Map
3uz63uz6O 3uz7O 3uz8W 3uz9WContact Map
3oge3ogeL 3ogyL 3oh52 3oh72Contact Map
3uyd3uydO 3uyeW 3uyfO 3uygWContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
61_L 30_R 1.08 0.05
49_K 53_A 1.07 0.05
37_F 68_P 1.03 0.04
25_V 105_A 0.93 0.03
32_L 97_I 0.91 0.03
13_A 70_E 0.87 0.03
68_R 65_A 0.87 0.03
29_K 111_K 0.87 0.03
25_V 38_R 0.86 0.03
28_K 30_R 0.86 0.03
39_A 81_L 0.84 0.03
45_S 68_P 0.83 0.02
41_I 58_T 0.83 0.02
39_A 58_T 0.83 0.02
46_Q 2_P 0.82 0.02
38_Q 30_R 0.82 0.02
9_Q 56_R 0.81 0.02
38_Q 35_T 0.80 0.02
14_R 58_T 0.79 0.02
45_S 113_S 0.79 0.02
37_F 35_T 0.78 0.02
29_K 97_I 0.77 0.02
13_A 113_S 0.77 0.02
63_V 121_K 0.76 0.02
28_K 70_E 0.76 0.02
19_V 98_V 0.75 0.02
29_K 104_A 0.75 0.02
48_H 21_V 0.74 0.02
25_V 52_V 0.74 0.02
29_K 80_V 0.73 0.02
31_E 15_V 0.73 0.02
25_V 34_C 0.73 0.02
24_L 68_P 0.73 0.02
29_K 68_P 0.73 0.02
28_K 79_V 0.72 0.02
46_Q 53_A 0.72 0.02
56_Q 64_T 0.72 0.02
53_L 13_E 0.71 0.02
49_K 21_V 0.71 0.02
43_Q 35_T 0.70 0.01
10_L 94_R 0.69 0.01
38_Q 101_V 0.69 0.01
57_I 71_G 0.68 0.01
25_V 70_E 0.68 0.01
63_V 79_V 0.67 0.01
48_H 30_R 0.67 0.01
53_L 8_V 0.67 0.01
42_G 125_A 0.67 0.01
31_E 111_K 0.67 0.01
42_G 88_K 0.67 0.01
48_H 22_P 0.66 0.01
26_R 82_I 0.66 0.01
42_G 70_E 0.66 0.01
42_G 11_G 0.65 0.01
41_I 11_G 0.64 0.01
15_K 70_E 0.64 0.01
31_E 109_D 0.64 0.01
43_Q 8_V 0.64 0.01
27_E 9_R 0.64 0.01
42_G 79_V 0.63 0.01
32_L 21_V 0.63 0.01
16_L 116_K 0.63 0.01
19_V 104_A 0.63 0.01
63_V 13_E 0.63 0.01
20_E 23_A 0.63 0.01
16_L 65_A 0.63 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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