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OPENSEQ.org
L29 - S13
UniProt: Q5SHP6 - P80377
Length: 198
Sequences: 1012
Seq/Len: 5.41
I_Prob: 0.17
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cM 3v2d2 3v2eM 3v2f2Contact Map
2j002j00M 2j012 2j02M 2j032Contact Map
4juw4juwM 4jux2Contact Map
4kix4kixY 4kiyM 4kizY 4kj0M 4kj1Y 4kj2M 4kj3Y 4kj4MContact Map
4kj54kj5Y 4kj6M 4kj7Y 4kj8M 4kj9Y 4kjaM 4kjbY 4kjcMContact Map
3knh3knhM 3kni2 3knjM 3knk2Contact Map
3ohc3ohcM 3ohdM 3ohj2 3ohk2Contact Map
3uz63uz6P 3uz7P 3uz8W 3uz9WContact Map
3u5b3u5cS 3u5eh 3u5gS 3u5ihContact Map
3oge3ogeM 3ogyM 3oh52 3oh72Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
41_I 72_A 1.15 0.17
29_K 44_R 0.94 0.09
54_K 46_K 0.93 0.08
32_L 8_E 0.91 0.08
32_L 84_I 0.90 0.08
30_R 118_A 0.81 0.05
63_V 113_P 0.80 0.05
37_F 61_E 0.79 0.05
33_M 72_A 0.76 0.05
51_R 94_R 0.75 0.04
48_H 30_A 0.74 0.04
40_S 14_R 0.71 0.04
59_R 55_R 0.69 0.03
24_L 8_E 0.69 0.03
39_A 48_L 0.69 0.03
9_Q 95_G 0.65 0.03
25_V 50_E 0.65 0.03
27_E 32_E 0.65 0.03
11_E 62_N 0.64 0.03
71_N 79_K 0.64 0.03
30_R 12_N 0.63 0.03
40_S 72_A 0.62 0.03
32_L 98_V 0.62 0.03
16_L 60_V 0.62 0.03
61_L 88_R 0.62 0.03
42_G 50_E 0.61 0.02
43_Q 22_I 0.61 0.02
16_L 8_E 0.60 0.02
54_K 37_T 0.59 0.02
22_E 17_V 0.58 0.02
61_L 81_L 0.58 0.02
31_E 44_R 0.57 0.02
55_R 83_D 0.57 0.02
32_L 11_R 0.57 0.02
47_N 4_I 0.57 0.02
33_M 48_L 0.57 0.02
32_L 12_N 0.57 0.02
68_R 18_A 0.56 0.02
59_R 26_G 0.56 0.02
24_L 86_C 0.56 0.02
29_K 15_V 0.56 0.02
47_N 33_A 0.55 0.02
20_E 48_L 0.55 0.02
34_E 11_R 0.55 0.02
37_F 102_R 0.55 0.02
19_V 28_A 0.55 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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