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OPENSEQ.org
L29 - S04
UniProt: Q5SHP6 - P80373
Length: 281
Sequences: 1040
Seq/Len: 3.82
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2d2 3v2eD 3v2f2Contact Map
2j002j00D 2j012 2j02D 2j032Contact Map
4juw4juwD 4jux2Contact Map
4kix4kixY 4kiyD 4kizY 4kj0D 4kj1Y 4kj2D 4kj3Y 4kj4DContact Map
4kj54kj5Y 4kj6D 4kj7Y 4kj8D 4kj9Y 4kjaD 4kjbY 4kjcDContact Map
3ohc3ohcD 3ohdD 3ohj2 3ohk2Contact Map
3knh3knhD 3kni2 3knjD 3knk2Contact Map
3uz63uz6G 3uz7G 3uz8W 3uz9WContact Map
3u5b3u5cJE 3u5eh 3u5gJE 3u5ihContact Map
3oge3ogeD 3ogyD 3oh52 3oh72Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
29_K 152_S 0.96 0.01
61_L 57_R 0.93 0.01
49_K 92_V 0.86 0.01
37_F 92_V 0.84 0.01
25_V 209_R 0.82 0.01
54_K 204_I 0.81 0.01
23_K 142_P 0.80 0.01
9_Q 153_R 0.74 0.01
23_K 138_Y 0.73 0.01
51_R 124_G 0.72 0.00
67_K 49_R 0.71 0.00
54_K 208_S 0.70 0.00
13_A 5_I 0.70 0.00
66_E 54_Y 0.69 0.00
57_I 193_D 0.69 0.00
29_K 53_D 0.68 0.00
43_Q 204_I 0.68 0.00
11_E 2_G 0.67 0.00
46_Q 48_A 0.65 0.00
15_K 159_R 0.65 0.00
22_E 117_A 0.65 0.00
48_H 113_S 0.65 0.00
69_R 10_R 0.64 0.00
57_I 110_F 0.64 0.00
60_L 199_N 0.64 0.00
63_V 193_D 0.63 0.00
29_K 50_R 0.62 0.00
23_K 153_R 0.62 0.00
22_E 203_V 0.61 0.00
55_R 18_K 0.61 0.00
55_R 172_P 0.60 0.00
15_K 120_L 0.60 0.00
42_G 57_R 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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