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OPENSEQ.org
L22 - S06
UniProt: Q5SHP3 - Q5SLP8
Length: 214
Sequences: 1130
Seq/Len: 5.38
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2dW 3v2eF 3v2fWContact Map
2j002j00F 2j01W 2j02F 2j03WContact Map
4juw4juwF 4juxWContact Map
4kix4kixS 4kiyF 4kizS 4kj0F 4kj1S 4kj2F 4kj3S 4kj4FContact Map
4kj54kj5S 4kj6F 4kj7S 4kj8F 4kj9S 4kjaF 4kjbS 4kjcFContact Map
3knh3knhF 3kniW 3knjF 3knkWContact Map
3ohc3ohcF 3ohdF 3ohjW 3ohkWContact Map
3uz63uz6I 3uz7I 3uz8S 3uz9SContact Map
3oge3ogeF 3ogyF 3oh5W 3oh7WContact Map
3uyd3uydI 3uyeS 3uyfI 3uygSContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
90_R 42_E 0.90 0.01
25_R 87_R 0.86 0.01
108_G 80_R 0.81 0.01
1_M 40_V 0.70 0.00
66_E 82_R 0.70 0.00
39_T 89_M 0.69 0.00
40_N 9_V 0.69 0.00
14_P 77_R 0.67 0.00
88_R 57_Q 0.67 0.00
105_V 42_E 0.66 0.00
66_E 94_Q 0.66 0.00
105_V 95_E 0.66 0.00
97_K 76_A 0.65 0.00
77_D 19_L 0.65 0.00
29_L 62_W 0.65 0.00
107_L 56_P 0.64 0.00
105_V 79_L 0.64 0.00
10_V 25_I 0.62 0.00
79_G 99_A 0.62 0.00
4_K 40_V 0.62 0.00
45_Y 18_Q 0.62 0.00
103_I 48_L 0.61 0.00
78_E 28_R 0.61 0.00
73_A 70_D 0.61 0.00
52_E 26_I 0.60 0.00
73_A 73_N 0.60 0.00
111_H 30_L 0.60 0.00
74_A 82_R 0.60 0.00
90_R 26_I 0.60 0.00
72_K 64_Q 0.59 0.00
99_R 92_K 0.59 0.00
80_P 31_E 0.58 0.00
8_R 36_R 0.58 0.00
75_Y 19_L 0.58 0.00
96_I 69_E 0.58 0.00
72_K 36_R 0.57 0.00
11_R 85_V 0.57 0.00
71_V 66_E 0.57 0.00
14_P 44_G 0.57 0.00
109_E 28_R 0.57 0.00
59_V 45_L 0.57 0.00
68_R 25_I 0.57 0.00
15_R 80_R 0.56 0.00
39_T 17_S 0.56 0.00
77_D 3_R 0.56 0.00
7_A 51_P 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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