May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L22 - L25
UniProt: Q5SHP3 - Q5SHZ1
Length: 319
Sequences: 1212
Seq/Len: 4.12
I_Prob: 0.08
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dWZ 3v2fWZContact Map
2j002j01WZ 2j03WZContact Map
4juw4juxWZContact Map
4kix4kixSV 4kizSV 4kj1SV 4kj3SVContact Map
4kj54kj5SV 4kj7SV 4kj9SV 4kjbSVContact Map
2zjr2zjrPSContact Map
4btc4btdWZContact Map
3uyd3uyeSV 3uygSVContact Map
4gd13r8sSV 3r8tSVContact Map
3knh3kniWZ 3knkWZContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
6_I 70_L 1.11 0.08
8_R 72_R 0.88 0.04
10_V 53_I 0.76 0.03
51_L 37_V 0.76 0.02
71_V 21_A 0.76 0.02
49_K 30_N 0.74 0.02
75_Y 17_A 0.72 0.02
105_V 100_V 0.71 0.02
77_D 96_V 0.71 0.02
23_L 172_A 0.71 0.02
95_I 78_K 0.70 0.02
106_I 148_D 0.69 0.02
82_L 165_V 0.69 0.02
8_R 49_R 0.68 0.02
59_V 44_F 0.68 0.02
47_V 128_V 0.68 0.02
50_V 24_L 0.67 0.02
88_R 13_E 0.67 0.02
77_D 167_P 0.67 0.02
45_Y 138_E 0.67 0.02
46_F 44_F 0.66 0.02
67_D 137_I 0.66 0.02
24_I 169_E 0.66 0.02
63_D 17_A 0.66 0.02
35_I 24_L 0.65 0.02
24_I 139_V 0.65 0.02
86_L 122_R 0.64 0.01
20_V 7_A 0.64 0.01
67_D 28_M 0.63 0.01
105_V 116_V 0.63 0.01
82_L 80_R 0.62 0.01
100_T 43_E 0.62 0.01
50_V 69_T 0.61 0.01
56_A 160_G 0.61 0.01
44_A 19_R 0.61 0.01
96_I 19_R 0.60 0.01
51_L 80_R 0.60 0.01
71_V 125_L 0.60 0.01
31_E 126_V 0.60 0.01
105_V 127_K 0.60 0.01
102_H 71_V 0.59 0.01
24_I 177_P 0.59 0.01
6_I 42_V 0.59 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.993 seconds.