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OPENSEQ.org

L22 - S03
UniProt: Q5SHP3 - P80372
Length: 352
Sequences: 1357
Seq/Len: 4.23
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cC 3v2dW 3v2eC 3v2fWContact Map
2j002j00C 2j01W 2j02C 2j03WContact Map
4juw4juwC 4juxWContact Map
4kix4kixS 4kiyC 4kizS 4kj0C 4kj1S 4kj2C 4kj3S 4kj4CContact Map
4kj54kj5S 4kj6C 4kj7S 4kj8C 4kj9S 4kjaC 4kjbS 4kjcCContact Map
3knh3knhC 3kniW 3knjC 3knkWContact Map
3ohc3ohcC 3ohdC 3ohjW 3ohkWContact Map
3uz63uz6F 3uz7F 3uz8S 3uz9SContact Map
3u5b3u5cD 3u5eP 3u5gD 3u5iPContact Map
3oge3ogeC 3ogyC 3oh5W 3oh7WContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
68_R 154_S 0.98 0.01
21_V 84_I 0.96 0.01
58_A 24_A 0.93 0.01
62_H 79_R 0.88 0.01
89_A 106_V 0.87 0.01
76_V 123_Q 0.87 0.01
71_V 181_N 0.84 0.01
4_K 42_L 0.83 0.01
77_D 132_R 0.83 0.01
69_L 124_I 0.82 0.01
19_L 173_V 0.80 0.01
61_N 18_W 0.80 0.01
52_E 91_L 0.80 0.01
12_I 56_D 0.77 0.01
21_V 101_L 0.76 0.01
52_E 66_V 0.76 0.01
82_L 55_V 0.76 0.01
103_I 195_V 0.76 0.01
96_I 85_R 0.75 0.01
15_R 26_K 0.74 0.01
94_D 8_I 0.73 0.01
90_R 152_I 0.73 0.01
94_D 110_N 0.72 0.01
105_V 36_D 0.70 0.01
80_P 118_Q 0.70 0.01
37_R 198_V 0.70 0.01
17_V 17_D 0.69 0.01
25_R 182_I 0.69 0.01
16_K 199_K 0.69 0.01
77_D 200_A 0.68 0.01
81_A 112_S 0.68 0.01
6_I 151_V 0.67 0.01
81_A 146_A 0.67 0.01
40_N 152_I 0.67 0.01
40_N 103_V 0.67 0.01
48_A 28_Q 0.66 0.01
70_Y 93_K 0.66 0.01
107_L 176_H 0.66 0.01
85_V 16_R 0.65 0.01
95_I 165_T 0.65 0.01
78_E 54_R 0.65 0.01
17_V 121_A 0.65 0.01
24_I 160_A 0.64 0.01
11_R 168_A 0.64 0.01
62_H 21_R 0.64 0.01
93_A 198_V 0.64 0.01
4_K 49_S 0.64 0.01
60_N 20_S 0.63 0.01
90_R 124_I 0.63 0.01
35_I 103_V 0.63 0.01
41_K 162_Q 0.62 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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