May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

L22 - L28
UniProt: Q5SHP3 - P60494
Length: 211
Sequences: 949
Seq/Len: 5.42
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dW1 3v2fW1Contact Map
2j002j01W1 2j03W1Contact Map
4juw4juxW1Contact Map
4kix4kixSX 4kizSX 4kj1SX 4kj3SXContact Map
4kj54kj5SX 4kj7SX 4kj9SX 4kjbSXContact Map
2zjr2zjrPUContact Map
4btc4btdW1Contact Map
3uyd3uyeSZ 3uygSZContact Map
4gd13r8sSX 3r8tSXContact Map
3knh3kniW1 3knkW1Contact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
60_N 39_K 0.89 0.01
38_Y 59_T 0.88 0.01
7_A 18_I 0.79 0.00
43_G 36_G 0.78 0.00
36_L 50_R 0.70 0.00
1_M 12_P 0.68 0.00
24_I 65_S 0.66 0.00
83_K 42_Q 0.65 0.00
59_V 70_V 0.64 0.00
108_G 18_I 0.63 0.00
9_Y 47_Q 0.62 0.00
106_I 48_K 0.62 0.00
8_R 11_R 0.60 0.00
29_L 3_K 0.60 0.00
42_R 73_L 0.60 0.00
44_A 44_P 0.59 0.00
95_I 37_I 0.58 0.00
62_H 10_K 0.57 0.00
79_G 66_H 0.57 0.00
27_K 64_A 0.57 0.00
105_V 54_A 0.57 0.00
38_Y 44_P 0.56 0.00
45_Y 17_S 0.56 0.00
24_I 40_R 0.56 0.00
12_I 37_I 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.2167 seconds.