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OPENSEQ.org

L22 - S07
UniProt: Q5SHP3 - P17291
Length: 269
Sequences: 1379
Seq/Len: 5.17
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2dW 3v2eG 3v2fWContact Map
2j002j00G 2j01W 2j02G 2j03WContact Map
4juw4juwG 4juxWContact Map
4kix4kixS 4kiyG 4kizS 4kj0G 4kj1S 4kj2G 4kj3S 4kj4GContact Map
4kj54kj5S 4kj6G 4kj7S 4kj8G 4kj9S 4kjaG 4kjbS 4kjcGContact Map
3ohc3ohcG 3ohdG 3ohjW 3ohkWContact Map
3knh3knhG 3kniW 3knjG 3knkWContact Map
3uz63uz6J 3uz7J 3uz8S 3uz9SContact Map
3oge3ogeG 3ogyG 3oh5W 3oh7WContact Map
3uyd3uydJ 3uyeS 3uyfJ 3uygSContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
76_V 4_R 0.88 0.00
15_R 94_R 0.84 0.00
94_D 149_R 0.83 0.00
68_R 47_C 0.82 0.00
99_R 4_R 0.80 0.00
71_V 14_P 0.79 0.00
74_A 56_Q 0.74 0.00
48_A 104_L 0.72 0.00
105_V 102_R 0.72 0.00
64_M 77_S 0.72 0.00
95_I 53_K 0.70 0.00
79_G 121_A 0.70 0.00
28_S 59_L 0.70 0.00
41_K 66_V 0.69 0.00
60_N 149_R 0.69 0.00
78_E 4_R 0.69 0.00
54_A 88_P 0.68 0.00
27_K 36_K 0.68 0.00
65_L 92_S 0.68 0.00
70_Y 73_M 0.67 0.00
33_R 104_L 0.67 0.00
78_E 9_V 0.67 0.00
9_Y 25_A 0.67 0.00
74_A 115_R 0.67 0.00
62_H 114_R 0.66 0.00
62_H 143_R 0.66 0.00
59_V 101_L 0.66 0.00
13_S 96_Q 0.65 0.00
29_L 116_A 0.65 0.00
4_K 45_D 0.65 0.00
98_K 84_N 0.65 0.00
94_D 115_R 0.65 0.00
16_K 103_W 0.64 0.00
76_V 8_E 0.63 0.00
56_A 75_V 0.63 0.00
64_M 125_M 0.63 0.00
88_R 131_K 0.63 0.00
3_A 16_L 0.63 0.00
27_K 138_K 0.63 0.00
93_A 154_Y 0.62 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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