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OPENSEQ.org
L23 - S06
UniProt: Q5SHP0 - Q5SLP8
Length: 197
Sequences: 1178
Seq/Len: 6.17
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2dX 3v2eF 3v2fXContact Map
2j002j00F 2j01X 2j02F 2j03XContact Map
4juw4juwF 4juxXContact Map
4kix4kixT 4kiyF 4kizT 4kj0F 4kj1T 4kj2F 4kj3T 4kj4FContact Map
4kj54kj5T 4kj6F 4kj7T 4kj8F 4kj9T 4kjaF 4kjbT 4kjcFContact Map
3knh3knhF 3kniX 3knjF 3knkXContact Map
3ohc3ohcF 3ohdF 3ohjX 3ohkXContact Map
3uz63uz6I 3uz7I 3uz8T 3uz9TContact Map
3oge3ogeF 3ogyF 3oh5X 3oh7XContact Map
3uyd3uydI 3uyeT 3uyfI 3uygTContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
29_W 7_N 0.92 0.01
21_F 87_R 0.87 0.01
13_L 70_D 0.86 0.01
72_K 89_M 0.84 0.01
74_P 85_V 0.83 0.01
8_I 52_I 0.80 0.01
61_G 7_N 0.80 0.01
81_V 83_D 0.79 0.01
24_G 72_V 0.79 0.01
40_K 13_N 0.79 0.01
13_L 68_P 0.74 0.01
52_V 32_N 0.74 0.01
34_A 38_E 0.73 0.01
10_A 66_E 0.72 0.01
83_V 92_K 0.72 0.01
65_R 46_R 0.72 0.01
24_G 90_V 0.72 0.01
7_V 21_L 0.72 0.01
42_A 46_R 0.71 0.01
66_L 76_A 0.71 0.01
74_P 56_P 0.70 0.01
80_I 18_Q 0.70 0.01
82_Q 68_P 0.70 0.01
91_A 88_V 0.70 0.01
14_S 31_E 0.69 0.01
5_Y 80_R 0.68 0.01
27_T 6_V 0.67 0.01
32_P 46_R 0.67 0.01
7_V 64_Q 0.66 0.01
33_K 14_L 0.66 0.01
54_V 43_L 0.65 0.00
29_W 1_M 0.64 0.00
33_K 75_L 0.64 0.00
95_L 8_I 0.64 0.00
32_P 34_G 0.63 0.00
93_E 17_S 0.63 0.00
85_P 27_Q 0.63 0.00
26_Y 87_R 0.62 0.00
56_T 77_R 0.62 0.00
7_V 99_A 0.62 0.00
84_A 72_V 0.62 0.00
61_G 19_L 0.62 0.00
83_V 74_D 0.62 0.00
17_A 60_F 0.61 0.00
55_N 92_K 0.61 0.00
45_T 31_E 0.61 0.00
73_R 81_I 0.61 0.00
74_P 48_L 0.60 0.00
5_Y 15_D 0.60 0.00
33_K 61_L 0.60 0.00
10_A 2_R 0.60 0.00
73_R 38_E 0.60 0.00
24_G 67_M 0.60 0.00
40_K 26_I 0.60 0.00
66_L 88_V 0.60 0.00
64_K 24_E 0.59 0.00
8_I 94_Q 0.59 0.00
86_G 84_N 0.59 0.00
45_T 33_Y 0.58 0.00
24_G 50_Y 0.58 0.00
2_K 13_N 0.58 0.00
26_Y 57_Q 0.58 0.00
20_G 92_K 0.58 0.00
77_K 21_L 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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