OPENSEQ.org
L23 - S11
UniProt: Q5SHP0 - P80376
Length: 225
Sequences: 1277
Seq/Len: 5.83
I_Prob: 0.12
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cK 3v2dX 3v2eK 3v2fXContact Map
2j002j00K 2j01X 2j02K 2j03XContact Map
4juw4juwK 4juxXContact Map
4kix4kixT 4kiyK 4kizT 4kj0K 4kj1T 4kj2K 4kj3T 4kj4KContact Map
4kj54kj5T 4kj6K 4kj7T 4kj8K 4kj9T 4kjaK 4kjbT 4kjcKContact Map
3knh3knhK 3kniX 3knjK 3knkXContact Map
3ohc3ohcK 3ohdK 3ohjX 3ohkXContact Map
3uz63uz6N 3uz7N 3uz8T 3uz9TContact Map
3u5b3u5cO 3u5eX 3u5gO 3u5iXContact Map
3oge3ogeK 3ogyK 3oh5X 3oh7XContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
24_G 115_P 1.12 0.12
46_A 23_A 1.07 0.11
14_S 124_K 1.07 0.11
17_A 59_Y 1.01 0.09
61_G 53_S 0.97 0.08
40_K 39_P 0.94 0.07
92_L 59_Y 0.89 0.06
55_N 9_K 0.85 0.05
65_R 9_K 0.84 0.05
26_Y 95_I 0.83 0.05
11_P 58_P 0.82 0.05
66_L 83_I 0.81 0.04
14_S 109_V 0.79 0.04
72_K 8_K 0.79 0.04
29_W 47_V 0.78 0.04
34_A 14_V 0.78 0.04
55_N 6_S 0.78 0.04
80_I 99_Q 0.77 0.04
17_A 75_Y 0.77 0.04
21_F 24_S 0.76 0.04
43_V 113_P 0.76 0.04
72_K 5_P 0.75 0.04
72_K 32_I 0.74 0.03
80_I 16_S 0.74 0.03
70_L 9_K 0.74 0.03
63_K 109_V 0.74 0.03
67_G 122_K 0.73 0.03
13_L 20_Y 0.73 0.03
21_F 1_M 0.71 0.03
86_G 95_I 0.71 0.03
25_K 77_M 0.70 0.03
19_A 67_D 0.70 0.03
47_F 8_K 0.70 0.03
20_G 4_K 0.69 0.03
4_A 43_S 0.68 0.03
90_E 59_Y 0.68 0.03
21_F 23_A 0.68 0.03
25_K 92_E 0.68 0.03
42_A 21_I 0.68 0.03
8_I 63_L 0.68 0.03
39_I 65_A 0.67 0.03
7_V 74_A 0.67 0.03
93_E 21_I 0.67 0.03
41_N 114_V 0.66 0.03
21_F 20_Y 0.66 0.03
73_R 85_R 0.66 0.03
34_A 113_P 0.66 0.02
72_K 11_K 0.66 0.02
66_L 22_H 0.65 0.02
91_A 107_S 0.65 0.02
78_K 93_Q 0.65 0.02
55_N 7_K 0.65 0.02
11_P 64_A 0.65 0.02
93_E 106_K 0.64 0.02
95_L 24_S 0.64 0.02
40_K 83_I 0.64 0.02
75_D 5_P 0.64 0.02
58_H 80_V 0.63 0.02
4_A 11_K 0.63 0.02
66_L 24_S 0.63 0.02
85_P 1_M 0.62 0.02
25_K 9_K 0.62 0.02
74_P 74_A 0.62 0.02
76_R 114_V 0.62 0.02
82_Q 101_S 0.62 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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