OPENSEQ.org
L23 - S03
UniProt: Q5SHP0 - P80372
Length: 335
Sequences: 1332
Seq/Len: 4.41
I_Prob: 0.17
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cC 3v2dX 3v2eC 3v2fXContact Map
2j002j00C 2j01X 2j02C 2j03XContact Map
4juw4juwC 4juxXContact Map
4kix4kixT 4kiyC 4kizT 4kj0C 4kj1T 4kj2C 4kj3T 4kj4CContact Map
4kj54kj5T 4kj6C 4kj7T 4kj8C 4kj9T 4kjaC 4kjbT 4kjcCContact Map
3knh3knhC 3kniX 3knjC 3knkXContact Map
3ohc3ohcC 3ohdC 3ohjX 3ohkXContact Map
3uz63uz6F 3uz7F 3uz8T 3uz9TContact Map
3u5b3u5cD 3u5eX 3u5gD 3u5iXContact Map
3oge3ogeC 3ogyC 3oh5X 3oh7XContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
61_G 103_V 1.17 0.17
41_N 66_V 1.03 0.11
76_R 88_R 1.00 0.10
15_E 74_G 0.90 0.07
92_L 56_D 0.89 0.07
38_E 115_L 0.86 0.06
8_I 93_K 0.85 0.06
75_D 149_A 0.84 0.06
13_L 141_V 0.83 0.06
85_P 151_V 0.82 0.05
14_S 19_E 0.79 0.05
7_V 119_R 0.78 0.05
84_A 151_V 0.77 0.04
55_N 202_I 0.75 0.04
56_T 94_L 0.75 0.04
11_P 74_G 0.74 0.04
88_K 52_L 0.74 0.04
38_E 146_A 0.74 0.04
20_G 31_H 0.74 0.04
25_K 101_L 0.73 0.04
86_G 176_H 0.72 0.04
94_G 135_K 0.72 0.04
8_I 209_G 0.72 0.04
37_T 91_L 0.71 0.03
24_G 52_L 0.71 0.03
23_E 154_S 0.70 0.03
70_L 20_S 0.70 0.03
57_L 196_L 0.70 0.03
50_K 149_A 0.70 0.03
75_D 23_Y 0.70 0.03
51_V 36_D 0.69 0.03
46_A 133_A 0.69 0.03
25_K 170_Q 0.68 0.03
90_E 42_L 0.68 0.03
61_G 134_I 0.68 0.03
61_G 6_H 0.68 0.03
43_V 61_A 0.68 0.03
26_Y 72_K 0.67 0.03
12_V 114_P 0.67 0.03
58_H 68_V 0.66 0.03
39_I 111_L 0.66 0.03
75_D 54_R 0.66 0.03
86_G 23_Y 0.65 0.03
3_T 66_V 0.65 0.03
80_I 140_R 0.65 0.03
72_K 23_Y 0.65 0.03
87_Q 76_V 0.65 0.03
94_G 153_V 0.65 0.03
56_T 207_V 0.64 0.03
92_L 124_I 0.64 0.03
37_T 117_A 0.64 0.03
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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