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OPENSEQ.org
L04 - L10
UniProt: Q5SHN9 - Q8VVE3
Length: 383
Sequences: 1344
Seq/Len: 3.64
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoCGContact Map
1vq81vq8CGContact Map
1vqp1vqpCGContact Map
1vqm1vqmCGContact Map
1vql1vqlCGContact Map
1vqk1vqkCGContact Map
1yhq1yhqCGContact Map
1s721s72CGContact Map
1vq91vq9CGContact Map
1vqn1vqnCGContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
127_E 15_E 0.95 0.01
108_K 26_L 0.94 0.01
66_P 98_K 0.89 0.01
66_P 16_N 0.86 0.01
23_D 17_L 0.84 0.01
78_I 131_M 0.83 0.01
85_G 79_A 0.80 0.00
91_G 91_K 0.80 0.00
97_Y 108_K 0.76 0.00
102_P 110_G 0.73 0.00
62_R 26_L 0.71 0.00
62_R 74_L 0.71 0.00
66_P 46_Q 0.67 0.00
33_L 78_S 0.67 0.00
167_A 23_S 0.66 0.00
19_E 116_I 0.65 0.00
80_A 155_G 0.65 0.00
17_R 107_V 0.64 0.00
75_H 104_I 0.64 0.00
149_D 93_L 0.64 0.00
43_K 140_G 0.63 0.00
186_I 166_A 0.63 0.00
49_A 13_L 0.63 0.00
101_L 4_K 0.63 0.00
113_A 20_A 0.62 0.00
182_N 46_Q 0.62 0.00
22_A 128_L 0.62 0.00
85_G 32_L 0.62 0.00
13_S 5_R 0.61 0.00
183_V 129_P 0.61 0.00
110_L 122_V 0.60 0.00
36_V 136_A 0.60 0.00
193_V 125_L 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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