May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L04 - S16
UniProt: Q5SHN9 - Q5SJH3
Length: 298
Sequences: 1460
Seq/Len: 5.11
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2dF 3v2eP 3v2fFContact Map
2j002j00P 2j01F 2j02P 2j03FContact Map
4juw4juwP 4juxFContact Map
4kix4kixE 4kiyP 4kizE 4kj0P 4kj1E 4kj2P 4kj3E 4kj4PContact Map
4kj54kj5E 4kj6P 4kj7E 4kj8P 4kj9E 4kjaP 4kjbE 4kjcPContact Map
3knh3knhP 3kniF 3knjP 3knkFContact Map
3ohc3ohcP 3ohdP 3ohjF 3ohkFContact Map
3uz63uz6S 3uz7S 3uz8F 3uz9FContact Map
3oge3ogeP 3ogyP 3oh5F 3oh7FContact Map
3uyd3uydS 3uyeF 3uyfS 3uygFContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
85_G 60_L 0.79 0.00
196_L 67_T 0.71 0.00
45_R 31_K 0.69 0.00
166_A 14_N 0.66 0.00
196_L 74_L 0.66 0.00
120_E 61_S 0.64 0.00
118_A 68_D 0.64 0.00
72_R 40_D 0.62 0.00
46_R 3_K 0.61 0.00
97_Y 31_K 0.59 0.00
62_R 57_R 0.58 0.00
87_G 2_V 0.58 0.00
139_F 36_I 0.58 0.00
186_I 74_L 0.57 0.00
51_T 18_R 0.57 0.00
99_Y 58_Y 0.56 0.00
57_V 13_H 0.56 0.00
173_V 1_M 0.56 0.00
7_Y 35_K 0.55 0.00
76_G 39_Y 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.8106 seconds.